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PLM3_30_b2_sep16_scaffold_882

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_882_1
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

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2..622
DNA (621bp) protein (207aa)
Transcriptional regulator/sugar kinase bin=GWF2_Lentisphaerae_52_8 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
transcriptional regulator
Tax=GWF2_Lentisphaerae_52_8_curated
PLM3_30_b2_sep16_scaffold_882_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

915..2222
DNA (1308bp) protein (436aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI0003810383
PurB; adenylosuccinate lyase
PLM3_30_b2_sep16_scaffold_882_3
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

2241..3230
DNA (990bp) protein (330aa)
DNA-formamidopyrimidine glycosylase (EC:3.2.2.23)
DNA-formamidopyrimidine glycosylase {ECO:0000313|EMBL:ACB74913.1}; EC=3.2.2.23 {ECO:0000313|EMBL:ACB74913.1};; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
DNA-formamidopyrimidine glycosylase Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUM9_OPITP
PLM3_30_b2_sep16_scaffold_882_4
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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3259..3558
DNA (300bp) protein (100aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XC6_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ85689.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_30_b2_sep16_scaffold_882_5
GWF2_Verrucomicrobia_51_19_curated, Opitutae, Verrucomicrobia, Bacteria

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comp(4234..5730)
DNA (1497bp) protein (499aa)
Sensory box protein bin=GWF2_Verrucomicrobia_51_19 species=Micavibrio aeruginosavorus genus=Micavibrio taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good +
putative multi-sensor signal transduction histidine kinase
Tax=GWF2_Verrucomicrobia_51_19_curated
PLM3_30_b2_sep16_scaffold_882_6
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

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5876..6286
DNA (411bp) protein (137aa)
PAS domain S-box bin=GWC2_Nitrospirae_57_13 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
multi-sensor hybrid histidine kinase
Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
PLM3_30_b2_sep16_scaffold_882_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(6592..8367)
DNA (1776bp) protein (592aa)
Tetratricopeptide TPR_2 repeat protein Tax=Pedosphaera parvula Ellin514 RepID=B9XRB7_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EEF57604.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nrfG; TPR repeats containing protein
PLM3_30_b2_sep16_scaffold_882_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8559..8990
DNA (432bp) protein (144aa)
Iron (Metal) dependent repressor, DtxR family Tax=Pedosphaera parvula Ellin514 RepID=B9XLJ4_9BACT
Iron (Metal) dependent repressor, DtxR family {ECO:0000313|EMBL:EEF59242.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
manganese transport transcriptional regulator
PLM3_30_b2_sep16_scaffold_882_9

Not on your lists

9200..9688
DNA (489bp) protein (163aa)
Marine sediment metagenome DNA, contig: S03H2_L03704 {ECO:0000313|EMBL:GAH44938.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_30_b2_sep16_scaffold_882_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(9883..10749)
DNA (867bp) protein (289aa)
Histone deacetylase superfamily Tax=Pedosphaera parvula Ellin514 RepID=B9XE21_9BACT
Histone deacetylase superfamily {ECO:0000313|EMBL:EEF61912.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
histone deacetylase superfamily protein
PLM3_30_b2_sep16_scaffold_882_11
unknown

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comp(10760..11770)
DNA (1011bp) protein (337aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_882_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12660..13280
DNA (621bp) protein (207aa)
Fumarylacetoacetate (FAA) hydrolase Tax=Pedosphaera parvula Ellin514 RepID=B9XB70_9BACT
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:EEF62755.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_882_13
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(13353..14510)
DNA (1158bp) protein (386aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029Y6_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ82140.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_30_b2_sep16_scaffold_882_14
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(14853..15407)
DNA (555bp) protein (185aa)
Uncharacterized protein Tax=Opitutaceae bacterium TAV1 RepID=I6B282_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EIQ01374.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_882_15
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(15411..17792)
DNA (2382bp) protein (794aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029Y7_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ82139.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_30_b2_sep16_scaffold_882_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(18984..20204)
DNA (1221bp) protein (407aa)
Putative squalene-hopene cyclase Tax=Chthoniobacter flavus Ellin428 RepID=B4CTZ7_9BACT
Putative squalene-hopene cyclase {ECO:0000313|EMBL:EDY22035.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
squalene cyclase
PLM3_30_b2_sep16_scaffold_882_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(21202..22215)
DNA (1014bp) protein (338aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Pedosphaera parvula Ellin514 RepID=B9XEU6_9BACT
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:EEF61810.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-deoxy-7-phosphoheptulonate synthase
PLM3_30_b2_sep16_scaffold_882_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

22849..25527
DNA (2679bp) protein (893aa)
Tetratricopeptide domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XIT7_9BACT
Tetratricopeptide domain protein {ECO:0000313|EMBL:EEF60164.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_882_19
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(25698..26840)
DNA (1143bp) protein (381aa)
Alanine racemase Tax=unclassified Opitutaceae RepID=H1IPZ8_9BACT
alanine racemase
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM3_30_b2_sep16_scaffold_882_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(26837..27490)
DNA (654bp) protein (218aa)
Peptidase M22 glycoprotease Tax=Pedosphaera parvula Ellin514 RepID=B9XDK7_9BACT
Peptidase M22 glycoprotease {ECO:0000313|EMBL:EEF62153.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycoprotease family protein
PLM3_30_b2_sep16_scaffold_882_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(27471..27923)
DNA (453bp) protein (151aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XDK6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62152.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_882_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(27901..28833)
DNA (933bp) protein (311aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Thiamine-monophosphate kinase Tax=Pedosphaera parvula Ellin514 RepID=B9XDK5_9BACT
thiamine-monophosphate kinase
PLM3_30_b2_sep16_scaffold_882_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(28846..29547)
DNA (702bp) protein (234aa)
Abortive infection protein Tax=Pedosphaera parvula Ellin514 RepID=B9XDK4_9BACT
Abortive infection protein {ECO:0000313|EMBL:EEF62150.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Abortive infection protein
PLM3_30_b2_sep16_scaffold_882_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

29811..30071
DNA (261bp) protein (87aa)
iscS2; cysteine desulfurase (EC:2.8.1.7)
Aminotransferase class V Tax=Pedosphaera parvula Ellin514 RepID=B9XEB6_9BACT
Aminotransferase class V {ECO:0000313|EMBL:EEF61630.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Displaying 24 items

View Taxonomy