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PLM3_30_b2_sep16_scaffold_918

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_918_1
unknown

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2..1663
DNA (1662bp) protein (554aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_918_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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1842..3323
DNA (1482bp) protein (494aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pedosphaera parvula Ellin514 RepID=B9XIL6_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF60279.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 factor
PLM3_30_b2_sep16_scaffold_918_3
RBG_16_Chloroflexi_64_43_curated, Chloroflexi, Bacteria

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3407..3778
DNA (372bp) protein (124aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XQC7_9BACT
hypothetical protein
Tax=RBG_16_Chloroflexi_64_43_curated
PLM3_30_b2_sep16_scaffold_918_4
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3820..4509
DNA (690bp) protein (230aa)
Uncharacterized protein Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W8Y0_UNCMA
Uncharacterized protein {ECO:0000313|EMBL:EYR67007.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_918_5
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(4668..8573)
DNA (3906bp) protein (1302aa)
Putative Beta-galactosidase bin=GWF2_Bacteroidetes_41_9 species=Oscillatoria sp. PCC 6506 genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
glycoside hydrolase family 2 sugar binding protein
Tax=RBG_16_Planctomycetes_55_9_curated
PLM3_30_b2_sep16_scaffold_918_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8718..9770)
DNA (1053bp) protein (351aa)
Uncharacterized protein Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BU75_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKB12397.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
membrane-bound dehydrogenase domain-containing protein
PLM3_30_b2_sep16_scaffold_918_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(9716..12328)
DNA (2613bp) protein (871aa)
Putative membrane-bound dehydrogenase Tax=Singulisphaera acidiphila RepID=L0DEX7_SINAD
membrane-bound dehydrogenase
Putative membrane-bound dehydrogenase {ECO:0000313|EMBL:AGA27395.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM3_30_b2_sep16_scaffold_918_8
RLO_PLX_64_10, Bacteria

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12439..13290
DNA (852bp) protein (284aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Tax=Gloeocapsa sp. PCC 7428 RepID=K9XDN9_9CHRO
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_30_b2_sep16_scaffold_918_9
CG_Arma_01, Armatimonadetes, Bacteria

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13305..14696
DNA (1392bp) protein (464aa)
Uncharacterized protein bin=GWC2_Bacteroidetes_40_22 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
Tax=CG_Arma_01
PLM3_30_b2_sep16_scaffold_918_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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15831..18212
DNA (2382bp) protein (794aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0002F5BEF3
Uncharacterized protein {ECO:0000313|EMBL:EDY17995.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
G8 domain-containing protein
PLM3_30_b2_sep16_scaffold_918_11
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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18271..19662
DNA (1392bp) protein (464aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D655_9BACT
hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM3_30_b2_sep16_scaffold_918_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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20028..20888
DNA (861bp) protein (287aa)
Bile acid:sodium symporter Tax=Pedosphaera parvula Ellin514 RepID=B9XG50_9BACT
Bile acid:sodium symporter {ECO:0000313|EMBL:EEF61212.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
bile acid transporter family protein
PLM3_30_b2_sep16_scaffold_918_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(20964..22394)
DNA (1431bp) protein (477aa)
Aminotransferase class-III Tax=Pedosphaera parvula Ellin514 RepID=B9XG49_9BACT
Aminotransferase class-III {ECO:0000313|EMBL:EEF61211.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
class III aminotransferase
PLM3_30_b2_sep16_scaffold_918_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(22412..23542)
DNA (1131bp) protein (377aa)
Sulfotransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XG51_9BACT
Sulfotransferase {ECO:0000313|EMBL:EEF61213.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_918_15
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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24003..24704
DNA (702bp) protein (234aa)
Adenylyl-sulfate kinase {ECO:0000256|RuleBase:RU004347, ECO:0000256|SAAS:SAAS00249903}; EC=2.7.1.25 {ECO:0000256|RuleBase:RU004347, ECO:0000256|SAAS:SAAS00249903};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
Adenylyl-sulfate kinase Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TID9_TISMK
cysC; NodQ bifunctional enzyme
PLM3_30_b2_sep16_scaffold_918_16
Bacteroides sp. 3_1_23, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(24749..24955)
DNA (207bp) protein (69aa)
Probable sialidase Tax=Bacteroides sp. 3_1_23 RepID=D7K462_9BACE
hypothetical protein
Probable sialidase {ECO:0000313|EMBL:EFI38436.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_23.;"
PLM3_30_b2_sep16_scaffold_918_17
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

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comp(24955..27246)
DNA (2292bp) protein (764aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003798FA1
hypothetical protein
Tax=RBG_13_Planctomycetes_63_9_curated
PLM3_30_b2_sep16_scaffold_918_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(27271..30261)
DNA (2991bp) protein (997aa)
Membrane-bound dehydrogenase domain protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CXV7_9BACT
Membrane-bound dehydrogenase domain protein {ECO:0000313|EMBL:EDY21105.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
membrane-bound dehydrogenase domain-containing protein
PLM3_30_b2_sep16_scaffold_918_trna_1
unknown

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comp(30429..30502)
DNA (74bp)
transferRNA Gly
Displaying 19 items

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