ggKbase home page

PLM3_30_b2_sep16_scaffold_504

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_504_1
unknown

Not on your lists

1..111
DNA (111bp) protein (37aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_504_2
Amycolicicoccus subflavus, Amycolicicoccus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(158..835)
DNA (678bp) protein (226aa)
Uncharacterized protein Tax=Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1) RepID=F6EQB0_AMYSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF40595.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Amycolicicoccus.;" source="Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1).;"
PLM3_30_b2_sep16_scaffold_504_3
Knoellia aerolata, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(881..1924)
DNA (1044bp) protein (348aa)
hypothetical protein Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI00035E7D3C
Alcohol dehydrogenase {ECO:0000313|EMBL:KGN40686.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia aerolata DSM 18566.;"
alcohol dehydrogenase
PLM3_30_b2_sep16_scaffold_504_4
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2120..2659
DNA (540bp) protein (180aa)
flavodoxin Tax=Amycolatopsis methanolica RepID=UPI00037C5206
flavodoxin
Flavodoxin {ECO:0000313|EMBL:AIJ23145.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM3_30_b2_sep16_scaffold_504_5
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(2672..3268)
DNA (597bp) protein (199aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI0003653EEE
LuxR family transcriptional regulator
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_504_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(3387..4478)
DNA (1092bp) protein (364aa)
Putative two-component histidine kinase bin=GWC2_Chloroflexi_73_18 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
putative two-component histidine kinase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_504_7
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4710..5300
DNA (591bp) protein (197aa)
hypothetical protein Tax=Dehalobacter sp. FTH1 RepID=UPI0003658224
Uncharacterized protein {ECO:0000313|EMBL:KJK13828.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_504_8
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5524..6702)
DNA (1179bp) protein (393aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
DNA polymerase IV Tax=Saccharomonospora marina XMU15 RepID=H5XB53_9PSEU
dinB; DNA polymerase IV
PLM3_30_b2_sep16_scaffold_504_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6818..7204
DNA (387bp) protein (129aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQP8_KORVE
Predicted small integral membrane protein {ECO:0000313|EMBL:CDM64399.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_504_10
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7383..8282)
DNA (900bp) protein (300aa)
Putative membrane-associated phospholipid phosphatase, PAP2 superfamily Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R346_CUPTR
membrane-associated phospholipid phosphatase, pap2 superfamily
Putative membrane-associated phospholipid phosphatase, PAP2 superfamily {ECO:0000313|EMBL:CAQ68726.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
PLM3_30_b2_sep16_scaffold_504_11
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8353..9165
DNA (813bp) protein (271aa)
Phosphoesterase PA-phosphatase Tax=Modestobacter marinus (strain BC501) RepID=I4EU39_MODMB
phosphoesterase PA-phosphatase
Phosphoesterase PA-phosphatase {ECO:0000313|EMBL:CCH86902.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM3_30_b2_sep16_scaffold_504_12
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9162..10049
DNA (888bp) protein (296aa)
Diacylglycerol kinase catalytic region Tax=Micromonospora RepID=D9TEJ1_MICAI
Sphingosine kinase {ECO:0000313|EMBL:ETK37835.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
sphingosine kinase
PLM3_30_b2_sep16_scaffold_504_13
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10046..11035
DNA (990bp) protein (330aa)
Putative membrane protein Tax=Mycobacterium smegmatis JS623 RepID=L0IT28_MYCSM
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGB22008.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis JS623.;"
PLM3_30_b2_sep16_scaffold_504_14
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11032..12231
DNA (1200bp) protein (400aa)
Putative cardiolipin synthetase Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4N589_KITSK
Phospholipase {ECO:0000313|EMBL:KDS86103.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
putative cardiolipin synthetase
PLM3_30_b2_sep16_scaffold_504_15
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

12375..12791
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Rhodococcus rhodnii LMG 5362 RepID=R7WP03_9NOCA
lactoylglutathione lyase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3_30_b2_sep16_scaffold_504_trna_1
unknown

Not on your lists

13162..13233
DNA (72bp)
transferRNA Val
PLM3_30_b2_sep16_scaffold_504_16
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13296..14024
DNA (729bp) protein (243aa)
peptide ABC transporter ATP-binding protein Tax=Streptomyces scabrisporus RepID=UPI00037017C9
putative ABC transporter, ATP-binding protein
Putative ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AHH21122.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
PLM3_30_b2_sep16_scaffold_504_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

14027..16561
DNA (2535bp) protein (845aa)
Uncharacterized protein Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AZN2_FRADG
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_504_18
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

16622..18547
DNA (1926bp) protein (642aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase Tax=Ilumatobacter coccineus YM16-304 RepID=M5A1J2_9ACTN
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_504_19
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

18571..19065
DNA (495bp) protein (165aa)
hypothetical protein Tax=Aigarchaeota archaeon SCGC AAA471-A16 RepID=UPI00037B8D29
histidine triad (HIT) protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_504_20
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

19112..19933
DNA (822bp) protein (274aa)
Alpha/beta hydrolase fold protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TG80_9CHLR
alpha/beta hydrolase fold protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_504_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19937..20347
DNA (411bp) protein (137aa)
hypothetical protein Tax=Brevibacillus sp. phR RepID=UPI0002D466E9
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_30_b2_sep16_scaffold_504_22
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(20354..22441)
DNA (2088bp) protein (696aa)
translation elongation factor 2 (EF-2/EF-G) bin=RBG_19FT_COMBO_GAL15_69_19 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
protein translation elongation factor G
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_504_23
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

22589..23089
DNA (501bp) protein (167aa)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_504_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

23109..24071
DNA (963bp) protein (321aa)
Lipid A biosynthesis acyltransferase Tax=Saccharomonospora paurometabolica YIM 90007 RepID=G4IY02_9PSEU
lipid A biosynthesis lauroyl acyltransferase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_504_25
Tetrasphaera elongata, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24014..25171
DNA (1158bp) protein (386aa)
GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase {ECO:0000313|EMBL:CCH70553.1}; EC=2.4.1.57 {ECO:0000313|EMBL:CCH70553.1};; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera elongata Lp2.;"
phosphatidylinositol alpha-mannosyltransferase (EC:2.4.1.57)
GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase Tax=Tetrasphaera elongata Lp2 RepID=N0E0Q7_9MICO
PLM3_30_b2_sep16_scaffold_504_26
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25773..26384
DNA (612bp) protein (204aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
HtpX2; heat shock protein HtpX
Tax=RBG_13_Deltaproteobacteria_53_10_curated
PLM3_30_b2_sep16_scaffold_504_27
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

26524..27627
DNA (1104bp) protein (368aa)
Secreted protein Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M016_ACIFD
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_504_28
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

27707..28594
DNA (888bp) protein (296aa)
pyridoxal biosynthesis protein Tax=Desulfurispora thermophila RepID=UPI00036CAFCD
pyridoxal biosynthesis lyase pdxS
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_504_29
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

28602..29159
DNA (558bp) protein (186aa)
Glutamine amidotransferase subunit PdxT Tax=Frankia sp. CN3 RepID=G6HQ07_9ACTO
SNO glutamine amidotransferase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Displaying items 1-30 of 42 in total

View Taxonomy