ggKbase home page

PLM3_5_b1_sep16_scaffold_148

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_5_b1_sep16_scaffold_148_1
BJP_08E140C01_Actinomycetales_70_11, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

2..511
DNA (510bp) protein (170aa)
dnaX; DNA polymerase III subunit gamma/tau (EC:2.7.7.7)
hypothetical protein Tax=Dehalobacter sp. FTH1 RepID=UPI0003782734
Tax=BJP_08E140C01_Actinomycetales_70_11
PLM3_5_b1_sep16_scaffold_148_2
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

550..876
DNA (327bp) protein (109aa)
Nucleoid-associated protein MLP_50390 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XH45_MICPN
hypothetical protein
Nucleoid-associated protein MLP_50390 {ECO:0000256|HAMAP-Rule:MF_00274}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
PLM3_5_b1_sep16_scaffold_148_3
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

887..1486
DNA (600bp) protein (200aa)
Recombination protein RecR Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XH44_MICPN
recR; recombination protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
PLM3_5_b1_sep16_scaffold_148_4
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1617..2621)
DNA (1005bp) protein (335aa)
Putative oxidoreductase Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XH43_MICPN
oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK38051.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
PLM3_5_b1_sep16_scaffold_148_5
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2618..3190)
DNA (573bp) protein (191aa)
Uncharacterized protein Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XH42_MICPN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK38050.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
PLM3_5_b1_sep16_scaffold_148_6
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3273..4538
DNA (1266bp) protein (422aa)
ask; aspartokinase (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
Aspartokinase Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XH39_MICPN
PLM3_5_b1_sep16_scaffold_148_7
unknown

Not on your lists

comp(4629..5195)
DNA (567bp) protein (189aa)

This feature has no annotations

PLM3_5_b1_sep16_scaffold_148_8
Halovivax ruber, Halovivax, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5676..6311
DNA (636bp) protein (212aa)
CAAX amino terminal protease family Tax=Halovivax ruber (strain DSM 18193 / JCM 13892 / XH-70) RepID=L0IFE7_HALRX
CAAX amino terminal protease family
CAAX amino terminal protease family {ECO:0000313|EMBL:AGB17484.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halovivax.;" source="Halovivax ruber (strain DSM 18193 / JCM 13892 / XH-70).;"
PLM3_5_b1_sep16_scaffold_148_9
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6344..7198)
DNA (855bp) protein (285aa)
hypothetical protein Tax=Streptomyces sp. CNB091 RepID=UPI00036D23F8
hypothetical protein
YdjC family protein {ECO:0000313|EMBL:AEM87189.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces violaceusniger Tu 4113.;"
PLM3_5_b1_sep16_scaffold_148_10
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7210..9675)
DNA (2466bp) protein (822aa)
Pyruvate/2-oxoglutarate dehydrogenase complex,dehydrogenase (E1) component, eukaryotic type, beta subunit (EC:1.2.4.4)
Uncharacterized protein Tax=Agrococcus pavilionensis RW1 RepID=U1MUG4_9MICO
Uncharacterized protein {ECO:0000313|EMBL:ERG64265.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
PLM3_5_b1_sep16_scaffold_148_11
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9711..10979)
DNA (1269bp) protein (423aa)
Uncharacterized protein Tax=Agrococcus pavilionensis RW1 RepID=U1MQT4_9MICO
Uncharacterized protein {ECO:0000313|EMBL:ERG64266.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
pdhC; pyruvate dehydrogenase E2 component
PLM3_5_b1_sep16_scaffold_148_12
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11083..11862
DNA (780bp) protein (260aa)
Acetoin reductase family protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VTD6_9ACTO
acetoin reductase family protein
Acetoin reductase family protein {ECO:0000313|EMBL:AGZ38926.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM3_5_b1_sep16_scaffold_148_13
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11906..12559
DNA (654bp) protein (218aa)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
Transaldolase Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W1A1_9ACTO
transaldolase
PLM3_5_b1_sep16_scaffold_148_14
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

12556..14157
DNA (1602bp) protein (534aa)
hypothetical protein Tax=Meiothermus timidus RepID=UPI0003666ADB
Strain A contig00057, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ54142.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber.;"
PfkB domain-containing protein
PLM3_5_b1_sep16_scaffold_148_15
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14154..15185
DNA (1032bp) protein (344aa)
2-deoxy-scyllo-inosamine dehydrogenase {ECO:0000313|EMBL:ABK71633.1}; EC=1.1.1.- {ECO:0000313|EMBL:ABK71633.1};; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155).;"
2-deoxy-scyllo-inosamine dehydrogenase Tax=Mycobacterium smegmatis RepID=A0QS68_MYCS2
2-deoxy-scyllo-inosamine dehydrogenase
PLM3_5_b1_sep16_scaffold_148_16
unknown

Not on your lists

comp(15201..16040)
DNA (840bp) protein (280aa)
PLM3_5_b1_sep16_scaffold_148_17
unknown

Not on your lists

16150..16365
DNA (216bp) protein (72aa)

This feature has no annotations

PLM3_5_b1_sep16_scaffold_148_18
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16397..17455
DNA (1059bp) protein (353aa)
Putative oxidoreductase protein Tax=Rhizobium mesoamericanum STM3625 RepID=K0PTZ8_9RHIZ
Putative oxidoreductase protein {ECO:0000313|EMBL:CCM80151.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
putative dehydrogenase-related protein
PLM3_5_b1_sep16_scaffold_148_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17452..18348
DNA (897bp) protein (299aa)
hypothetical protein Tax=Streptomyces prunicolor RepID=UPI00037CA8E8
epimerase
Epimerase protein {ECO:0000313|EMBL:ACM30637.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
PLM3_5_b1_sep16_scaffold_148_20
Rathayibacter toxicus, Rathayibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18569..19216
DNA (648bp) protein (216aa)
hypothetical protein Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B7A2BD
hypothetical protein
Strain 70137, complete genome {ECO:0000313|EMBL:AJM78136.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rathayibacter.;" source="Rathayibacter toxicus.;"
PLM3_5_b1_sep16_scaffold_148_21
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19243..21513
DNA (2271bp) protein (757aa)
protein kinase Tax=Rhodococcus opacus RepID=UPI00029CB35C
Protein kinase {ECO:0000313|EMBL:AII07236.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (Nocardia opaca).;"
Serine/threonine-protein kinase pknK
PLM3_5_b1_sep16_scaffold_148_22
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21635..21925
DNA (291bp) protein (97aa)
Uncharacterized protein Tax=Frankia sp. EUN1f RepID=D3D5F7_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFC81844.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
hypothetical protein
Displaying 22 items

View Taxonomy