ggKbase home page

PLM3_5_b1_sep16_scaffold_2109

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_5_b1_sep16_scaffold_2109_1
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(2..391)
DNA (390bp) protein (130aa)
Aldo/keto reductase Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LY58_ACIFD
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ACU53666.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC; 103882 / ICP).;"
PLM3_5_b1_sep16_scaffold_2109_2
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(452..814)
DNA (363bp) protein (121aa)
Putative transcriptional regulator, XRE family Tax=Micromonospora lupini str. Lupac 08 RepID=I0KW78_9ACTO
Putative transcriptional regulator, XRE family {ECO:0000313|EMBL:CCH15825.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM3_5_b1_sep16_scaffold_2109_3
Facklamia languida, Facklamia, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(811..1380)
DNA (570bp) protein (190aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Facklamia.;" source="Facklamia languida CCUG 37842.;"
ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit Tax=Facklamia languida CCUG 37842 RepID=H3NHW9_9LACT
PLM3_5_b1_sep16_scaffold_2109_4
unknown

Not on your lists

1508..1876
DNA (369bp) protein (123aa)

This feature has no annotations

PLM3_5_b1_sep16_scaffold_2109_5
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

1991..2728
DNA (738bp) protein (246aa)
Cytochrome c oxidase, subunit II bin=GWC2_Chloroflexi_73_18 species=Geodermatophilus obscurus genus=Geodermatophilus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
cytochrome c oxidase subunit II
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3_5_b1_sep16_scaffold_2109_6
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

2747..4429
DNA (1683bp) protein (561aa)
ctaD; cytochrome c oxidase, subunit I (EC:1.9.3.1)
Cytochrome c oxidase subunit I Tax=Rhodococcus erythropolis RepID=Q3L9E6_RHOE4
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3_5_b1_sep16_scaffold_2109_7
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4434..4967
DNA (534bp) protein (178aa)
Cytochrome c oxidase polypeptide 4 {ECO:0000256|PIRNR:PIRNR017385}; EC=1.9.3.1 {ECO:0000256|PIRNR:PIRNR017385};; Cytochrome aa3 subunit 4 {ECO:0000256|PIRNR:PIRNR017385}; Cytochrome c oxidase polypeptide IV {ECO:0000256|PIRNR:PIRNR017385}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
hypothetical protein Tax=Dehalobacter sp. FTH1 RepID=UPI00036C37BC
hypothetical protein
PLM3_5_b1_sep16_scaffold_2109_8
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4964..6379)
DNA (1416bp) protein (472aa)
qcrB; Menaquinol-cytochrome c reductase cytochrome b subunit (EC:1.10.2.-)
Menaquinol-cytochrome c reductase cytochrome b subunit {ECO:0000313|EMBL:CCH88944.1}; EC=1.10.2.- {ECO:0000313|EMBL:CCH88944.1};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
Menaquinol-cytochrome c reductase cytochrome b subunit Tax=Modestobacter marinus (strain BC501) RepID=I4EZY1_MODMB
PLM3_5_b1_sep16_scaffold_2109_9
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6387..7166)
DNA (780bp) protein (260aa)
Putative Ubiquinol-cytochrome c reductase iron-sulfur subunit Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z1C4_9ACTN
Putative Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000313|EMBL:CCM63081.1}; species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
Rieske (2Fe-2S) domain-containing protein
PLM3_5_b1_sep16_scaffold_2109_10
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(7183..8007)
DNA (825bp) protein (275aa)
Cytochrome c class I Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M193_ACIFD
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:ACU54741.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC; 103882 / ICP).;"
PLM3_5_b1_sep16_scaffold_2109_11
Streptomyces toyocaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8130..8930
DNA (801bp) protein (267aa)
Putative tryptophan 2,3-dioxygenase Tax=mine drainage metagenome RepID=E6PIA2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KES06111.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces toyocaensis.;"
tryptophan 23-dioxygenase
PLM3_5_b1_sep16_scaffold_2109_12
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

8946..9809
DNA (864bp) protein (288aa)
Aldo/keto reductase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AR92_RUBXD
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABG06086.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_5_b1_sep16_scaffold_2109_13
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

9810..10655
DNA (846bp) protein (282aa)
hypothetical protein Tax=Sciscionella marina RepID=UPI00035D2918
prolipoprotein diacylglyceryl transferase
Tax=RBG_16_Actinobacteria_67_15_curated
PLM3_5_b1_sep16_scaffold_2109_14
unknown

Not on your lists

10643..10714
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 14 items

View Taxonomy