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PLM3_60_b1_sep16_scaffold_111

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Displaying items 1-30 of 36 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_111_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1..279
DNA (279bp) protein (93aa)
appB; oligopeptide transport system permease (EC:3.6.3.24)
Oligopeptide ABC transporter substrate-binding protein bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

279..1223
DNA (945bp) protein (315aa)
oppC; peptide ABC transporter membrane protein (EC:3.6.3.24)
Peptide ABC transporter membrane protein bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_b1_sep16_scaffold_111_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1227..1592)
DNA (366bp) protein (122aa)
Two component transcriptional regulator bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1829..3322)
DNA (1494bp) protein (498aa)
5'-nucleotidase bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative 5`-nucleotidase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3319..4617)
DNA (1299bp) protein (433aa)
fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (EC:5.2.1.8)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2KKZ2_9PROT
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4628..5422)
DNA (795bp) protein (265aa)
hypothetical protein; K07019 bin=bin7_NC10_sister species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase fold protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_b1_sep16_scaffold_111_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5638..5865)
DNA (228bp) protein (76aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_b1_sep16_scaffold_111_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5887..6168)
DNA (282bp) protein (94aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Saccharomonospora marina genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_b1_sep16_scaffold_111_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6165..7202)
DNA (1038bp) protein (346aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7320..8480)
DNA (1161bp) protein (387aa)
EmrB/QacA family drug resistance transporter bin=bin7_NC10_sister species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator superfamily transporter
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_b1_sep16_scaffold_111_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8501..9232
DNA (732bp) protein (244aa)
Putative membrane protein bin=GWC2_Methylomirabilis_70_16 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_b1_sep16_scaffold_111_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9313..9636
DNA (324bp) protein (108aa)
Thioesterase superfamily protein bin=GWF2_Methylomirabilis_70_14 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_b1_sep16_scaffold_111_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9637..10026
DNA (390bp) protein (130aa)
MaoC-like dehydratase bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10023..10559)
DNA (537bp) protein (179aa)
hypothetical protein bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_b1_sep16_scaffold_111_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10859..11062
DNA (204bp) protein (68aa)
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein bin=bin7_NC10_sister species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
LivF; ABC-type branched-chain amino acid transport systems, ATPase component
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_b1_sep16_scaffold_111_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11085..12308
DNA (1224bp) protein (408aa)
amidase, hydantoinase/carbamoylase family (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_b1_sep16_scaffold_111_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12337..13095)
DNA (759bp) protein (253aa)
Endonuclease/exonuclease/phosphatase bin=GWA2_Methylomirabilis_73_35 species=Herbaspirillum frisingense genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_b1_sep16_scaffold_111_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13095..14756)
DNA (1662bp) protein (554aa)
Endonuclease/exonuclease/phosphatase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type I phosphodiesterase/nucleotide pyrophosphatase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

14767..16974
DNA (2208bp) protein (736aa)
Acyl-CoA dehydrogenase bin=GWA2_Methylomirabilis_73_35 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_60_b1_sep16_scaffold_111_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16996..17295
DNA (300bp) protein (100aa)
ATP-dependent Clp protease adaptor protein ClpS bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ATP-dependent Clp protease adaptor protein ClpS
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17292..18395
DNA (1104bp) protein (368aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_60_b1_sep16_scaffold_111_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18683..18988)
DNA (306bp) protein (102aa)
D-galactarate dehydratase/altronate hydrolase-like protein bin=GWC2_Methylomirabilis_70_16 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative galactarate dehydratase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19009..19914)
DNA (906bp) protein (302aa)
Cobalt-zinc-cadmium resistance protein CzcD bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
czcD; cation efflux system protein czcD
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_24
unknown

Not on your lists

comp(19988..20554)
DNA (567bp) protein (189aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_111_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20592..21416
DNA (825bp) protein (275aa)
alpha/beta hydrolase fold protein bin=bin7_NC10_sister species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21430..22071)
DNA (642bp) protein (214aa)
Molybdopterin binding protein bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium F25-01 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yuiH; hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22237..23004
DNA (768bp) protein (256aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_b1_sep16_scaffold_111_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23027..23392)
DNA (366bp) protein (122aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_b1_sep16_scaffold_111_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23399..23857)
DNA (459bp) protein (153aa)
DoxX family protein bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_b1_sep16_scaffold_111_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23879..24112
DNA (234bp) protein (78aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying items 1-30 of 36 in total

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