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PLM3_60_b1_sep16_scaffold_3363

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_3363_1
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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comp(1..279)
DNA (279bp) protein (93aa)
Putative cysteine desulfurase {ECO:0000313|EMBL:CCQ91376.1}; EC=2.8.1.7 {ECO:0000313|EMBL:CCQ91376.1};; species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211).;"
Putative cysteine desulfurase Tax=Nitrospina gracilis 3/211 RepID=M1Z0W9_9BACT
nifS; cysteine sulfinate desulfinase/cysteine desulfurase
PLM3_60_b1_sep16_scaffold_3363_2
Thermotoga sp. RQ7, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

355..1368
DNA (1014bp) protein (338aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:AJG40461.1}; EC=2.5.1.54 {ECO:0000313|EMBL:AJG40461.1};; species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga sp. RQ7.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Thermotoga RepID=AROF_THEMA
PLM3_60_b1_sep16_scaffold_3363_3
CSP1_5_NC10, NC10, Bacteria

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1390..2217
DNA (828bp) protein (276aa)
hypothetical protein; K07083 bin=bin3_NC10 species=Sulfurihydrogenibium azorense genus=Sulfurihydrogenibium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3_60_b1_sep16_scaffold_3363_4
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

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2214..3872
DNA (1659bp) protein (553aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI000382E181
sulfatase
Tax=RBG_13_Aminicenantes_63_10_curated
PLM3_60_b1_sep16_scaffold_3363_5
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

4033..5967
DNA (1935bp) protein (645aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI00037D2966
sulfatase
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
PLM3_60_b1_sep16_scaffold_3363_6
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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comp(5970..6347)
DNA (378bp) protein (126aa)
Holo-[acyl-carrier-protein] synthase Tax=Koribacter versatilis (strain Ellin345) RepID=ACPS_KORVE
acpS; 4'-phosphopantetheinyl transferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM3_60_b1_sep16_scaffold_3363_7
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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comp(6421..7137)
DNA (717bp) protein (239aa)
peptide chain release factor 2 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
prfB; peptide chain release factor 2
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM3_60_b1_sep16_scaffold_3363_8
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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7449..8033
DNA (585bp) protein (195aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=S9PAI5_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPX60096.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_3363_9
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

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comp(8154..9170)
DNA (1017bp) protein (339aa)
Secretion protein HlyD family protein Tax=Thiothrix nivea DSM 5205 RepID=I3BY66_9GAMM
secretion protein HlyD family protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM3_60_b1_sep16_scaffold_3363_10
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

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comp(9160..9855)
DNA (696bp) protein (232aa)
ABC transporter related protein Tax=Thiothrix nivea DSM 5205 RepID=I3BY67_9GAMM
ABC transporter ATPase
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM3_60_b1_sep16_scaffold_3363_11
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9868..10992)
DNA (1125bp) protein (375aa)
ABC efflux pump, inner membrane subunit bin=GWC2_Methylomirabilis_70_24 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
efflux ABC transporter inner membrane protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
PLM3_60_b1_sep16_scaffold_3363_12
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11063..11701)
DNA (639bp) protein (213aa)
Transcriptional regulator, TetR family bin=GWA2_Ignavibacteria_55_11 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
TetR family transcriptional regulator
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM3_60_b1_sep16_scaffold_3363_13
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12131..14143
DNA (2013bp) protein (671aa)
2,4-dienoyl-CoA reductase (EC:1.3.1.34)
2,4-dienoyl-CoA reductase Tax=Brevibacillus laterosporus RepID=UPI0003759A2A
2,4-dienoyl-CoA reductase {ECO:0000313|EMBL:AKF93528.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus (Bacillus laterosporus).;"
PLM3_60_b1_sep16_scaffold_3363_14
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14201..14371
DNA (171bp) protein (57aa)
id=2069120 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3_60_b1_sep16_scaffold_3363_15
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14334..14774
DNA (441bp) protein (147aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3_60_b1_sep16_scaffold_3363_16
Hydrogenobacter thermophilus, Hydrogenobacter, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

14778..15260
DNA (483bp) protein (161aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) RepID=D3DGV6_HYDTT
alkyl hydroperoxide reductase
Peroxiredoxin-like protein {ECO:0000313|EMBL:BAI69058.1}; species="Bacteria; Aquificae; Aquificales; Aquificaceae; Hydrogenobacter.;" source="Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6).;"
PLM3_60_b1_sep16_scaffold_3363_17
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

15312..17318
DNA (2007bp) protein (669aa)
NAD-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
NAD-dependent DNA ligase
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
PLM3_60_b1_sep16_scaffold_3363_18
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(17397..17915)
DNA (519bp) protein (173aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=uncultured bacterium 213 RepID=E3T6W5_9BACT
glyoxalase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_60_b1_sep16_scaffold_3363_19
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(17912..18097)
DNA (186bp) protein (62aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHZ3_KORVE
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_60_b1_sep16_scaffold_3363_20
unknown

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comp(18457..18789)
DNA (333bp) protein (111aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_3363_21
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

18908..19900
DNA (993bp) protein (331aa)
ABC transporter substrate-binding protein Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B30EFF
ABC transporter substrate-binding protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_3363_22
Sulfurihydrogenibium sp. YO3AOP1, Sulfurihydrogenibium, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

19893..20966
DNA (1074bp) protein (358aa)
ABC transporter permease Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B315E5
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACD67047.1}; species="Bacteria; Aquificae; Aquificales; Hydrogenothermaceae; Sulfurihydrogenibium.;" source="Sulfurihydrogenibium sp. (strain YO3AOP1).;"
PLM3_60_b1_sep16_scaffold_3363_23
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(20999..21634)
DNA (636bp) protein (212aa)
phoR2; alkaline phosphatase synthesis sensor protein PhoR (EC:2.7.13.3)
Response regulator receiver bin=GWB2_Nitrospirae_rel_47_37 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Displaying 23 items

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