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PLM3_60_b1_sep16_scaffold_3511

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_3511_1
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(2..391)
DNA (390bp) protein (130aa)
Elongation factor Tu Tax=Koribacter versatilis (strain Ellin345) RepID=EFTU_KORVE
tuf; elongation factor Tu
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_3511_2
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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comp(423..2462)
DNA (2040bp) protein (680aa)
Elongation factor G Tax=Koribacter versatilis (strain Ellin345) RepID=EFG_KORVE
elongation factor G
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM3_60_b1_sep16_scaffold_3511_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(2599..2940)
DNA (342bp) protein (114aa)
30S ribosomal protein S7 Tax=Streptococcus agalactiae RepID=UPI0002B99BE6
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
30S ribosomal protein S7
PLM3_60_b1_sep16_scaffold_3511_4
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists


comp(3091..3465)
DNA (375bp) protein (125aa)
30S ribosomal protein S12 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P942_DEFDS
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC; 101012 / SSM1).;"
PLM3_60_b1_sep16_scaffold_3511_5
R_Acidobacteria_60_20, Acidobacteria, Bacteria

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comp(3676..7869)
DNA (4194bp) protein (1398aa)
rpoC; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F3Y4_ACIC5
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3_60_b1_sep16_scaffold_3511_6
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

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comp(7903..10047)
DNA (2145bp) protein (715aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta Tax=Verrucomicrobium spinosum RepID=UPI0001745BD2
Tax=RBG_13_RIF03_48_7_curated
PLM3_60_b1_sep16_scaffold_3511_7
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(10160..12013)
DNA (1854bp) protein (618aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
DNA-directed RNA polymerase subunit beta Tax=Terriglobus saanensis RepID=E8V290_TERSS
DNA-directed RNA polymerase subunit beta
PLM3_60_b1_sep16_scaffold_3511_8
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(12145..12882)
DNA (738bp) protein (246aa)
Fused 50S ribosomal proteins L10 and L7/L12 (Modular protein) Tax=Candidatus Nitrospira defluvii RepID=D8PCU3_9BACT
rplJL; fused 50S ribosomal proteins L10 and L7/L12
Fused 50S ribosomal proteins L10 and L7/L12 (Modular protein) {ECO:0000313|EMBL:CBK41052.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_3511_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(12891..13592)
DNA (702bp) protein (234aa)
50S ribosomal protein L1 Tax=Koribacter versatilis (strain Ellin345) RepID=RL1_KORVE
rplA; 50S ribosomal protein L1
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_60_b1_sep16_scaffold_3511_10
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13671..14093)
DNA (423bp) protein (141aa)
50S ribosomal protein L11 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
rplK; 50S ribosomal protein L11
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
PLM3_60_b1_sep16_scaffold_3511_11
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(14123..14656)
DNA (534bp) protein (178aa)
transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transcription antitermination protein nusG
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM3_60_b1_sep16_scaffold_3511_12
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(14669..14905)
DNA (237bp) protein (79aa)
Protein translocase subunit SecE Tax=uncultured Acidobacteria bacterium RepID=H5SBR0_9BACT
protein translocation complex subunit SecE
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_3511_trna_3
unknown

Not on your lists

comp(14971..15044)
DNA (74bp)
transferRNA Trp
PLM3_60_b1_sep16_scaffold_3511_trna_2
unknown

Not on your lists

comp(15296..15367)
DNA (72bp)
transferRNA Thr
PLM3_60_b1_sep16_scaffold_3511_13
unknown

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15362..15817
DNA (456bp) protein (152aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_3511_trna_1
unknown

Not on your lists

comp(15571..15653)
DNA (83bp)
transferRNA Tyr
PLM3_60_b1_sep16_scaffold_3511_14
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(15834..16997)
DNA (1164bp) protein (388aa)
Glycine/D-amino acid oxidases (deaminating) (EC:1.5.3.1)
Glycine/D-amino acid oxidases (Deaminating) {ECO:0000313|EMBL:CCW34929.1}; EC=1.5.3.1 {ECO:0000313|EMBL:CCW34929.1};; species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
Glycine/D-amino acid oxidases (Deaminating) Tax=Chthonomonas calidirosea T49 RepID=S0EUF7_9BACT
PLM3_60_b1_sep16_scaffold_3511_15
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16997..17413)
DNA (417bp) protein (139aa)
hypothetical protein Tax=Pontibacter roseus RepID=UPI000377E967
dioxygenase
Dioxygenase {ECO:0000313|EMBL:AKD04984.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
PLM3_60_b1_sep16_scaffold_3511_16
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

Not on your lists

17459..18322
DNA (864bp) protein (288aa)
Histone deacetylase Tax=planctomycete KSU-1 RepID=I3IIW7_9PLAN
putative deacetylase, histone deacetylase family
Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
Displaying 19 items

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