ggKbase home page

PLM3_60_b1_sep16_scaffold_149

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_149_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1..324)
DNA (324bp) protein (108aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B68790
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_b1_sep16_scaffold_149_2
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(370..762)
DNA (393bp) protein (131aa)
type II secretion system protein G; K02456 general secretion pathway protein G bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
general secretion pathway protein GspG
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_149_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(781..1386)
DNA (606bp) protein (202aa)
General secretion pathway protein G Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQ51_KORVE
general secretion pathway protein G
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_b1_sep16_scaffold_149_4
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(1396..3825)
DNA (2430bp) protein (810aa)
Type II and III secretion system protein Tax=uncultured bacterium A1Q1_fos_517 RepID=L7VWY2_9BACT
type II and III secretion system protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_149_5
unknown

Not on your lists

comp(3825..4445)
DNA (621bp) protein (207aa)
hypothetical protein
PLM3_60_b1_sep16_scaffold_149_6
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

Not on your lists

comp(4447..5010)
DNA (564bp) protein (188aa)
hypothetical protein bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
Tax=RBG_13_Aminicenantes_59_9_curated
PLM3_60_b1_sep16_scaffold_149_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(5007..5672)
DNA (666bp) protein (222aa)
fimbrial assembly protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3_60_b1_sep16_scaffold_149_8
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(5669..6661)
DNA (993bp) protein (331aa)
Tfp pilus assembly protein ATPase PilM-like protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFB0_GEOUR
Tfp pilus assembly protein ATPase PilM-like protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3_60_b1_sep16_scaffold_149_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(6704..8362)
DNA (1659bp) protein (553aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
type II secretion system protein E
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_b1_sep16_scaffold_149_10
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(8372..9592)
DNA (1221bp) protein (407aa)
type II secretion system protein; K02653 type IV pilus assembly protein PilC bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
type II secretion system protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_149_11
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(9729..10448)
DNA (720bp) protein (240aa)
hypothetical protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_149_12
unknown

Not on your lists

comp(10445..10927)
DNA (483bp) protein (161aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_149_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11323..11928)
DNA (606bp) protein (202aa)
Outer membrane lipoprotein carrier protein LolA bin=GWC2_Deltaproteobacteria_42_51 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
outer membrane lipoprotein carrier protein LolA
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_b1_sep16_scaffold_149_14
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

12146..13135
DNA (990bp) protein (330aa)
Radical SAM domain protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01UP8_SOLUE
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ABJ86622.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_60_b1_sep16_scaffold_149_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13319..14257)
DNA (939bp) protein (313aa)
protein phosphatase 1 Tax=Schlesneria paludicola RepID=UPI00029A6DB2
serine/threonine protein phosphatase
Serine/threonine protein phosphatase {ECO:0000313|EMBL:AGA25428.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM3_60_b1_sep16_scaffold_149_16
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(14353..16713)
DNA (2361bp) protein (787aa)
O-succinylbenzoate--CoA ligase Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NQT8_GRAMM
o-succinylbenzoate--CoA ligase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3_60_b1_sep16_scaffold_149_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16710..17357)
DNA (648bp) protein (216aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4C0_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Carboxymuconolactone decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_60_b1_sep16_scaffold_149_18
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists


comp(17430..19385)
DNA (1956bp) protein (652aa)
arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
arginyl-tRNA synthetase (EC:6.1.1.19)
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM3_60_b1_sep16_scaffold_149_19
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(19421..20932)
DNA (1512bp) protein (504aa)
Ribonuclease, Rne/Rng family Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E2E4_GEOLS
Rne/Rng family ribonuclease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3_60_b1_sep16_scaffold_149_20
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(21097..21846)
DNA (750bp) protein (250aa)
Radical SAM domain iron-sulfur cluster-binding oxidoreductase, DUF2344-containing bin=GWC2_Nitrospirae_57_13 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
Tax=GWC2_Nitrospirae_57_13_curated
PLM3_60_b1_sep16_scaffold_149_21
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(21868..22959)
DNA (1092bp) protein (364aa)
Cell elongation-specific peptidoglycan biosynthesis regulator RodA Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRN2_KORVE
rod shape-determining protein RodA
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM3_60_b1_sep16_scaffold_149_22
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(22956..24884)
DNA (1929bp) protein (643aa)
penicillin-binding protein 2 (EC:2.4.1.129)
peptidoglycan glycosyltransferase; K05515 penicillin-binding protein 2 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_60_b1_sep16_scaffold_149_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(24877..25353)
DNA (477bp) protein (159aa)
hypothetical protein Tax=Orenia marismortui RepID=UPI000382250F
Rod shape-determining protein MreD {ECO:0000313|EMBL:CDM65252.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rod shape-determining protein MreD
PLM3_60_b1_sep16_scaffold_149_24
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25350..26303)
DNA (954bp) protein (318aa)
Cell shape-determining protein MreC Tax=Desulfococcus multivorans DSM 2059 RepID=S7TP95_DESML
rod shape-determining protein MreC
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM3_60_b1_sep16_scaffold_149_25
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(26328..27350)
DNA (1023bp) protein (341aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
MreB/Mrl family cell shape determining protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_60_b1_sep16_scaffold_149_26

Not on your lists

comp(27361..28287)
DNA (927bp) protein (309aa)
Diguanylate cyclase Tax=uncultured bacterium 293 RepID=E3T615_9BACT
Diguanylate cyclase {ECO:0000313|EMBL:ADC35759.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium 293.;"
GAF/GGDEF domain-containing protein
PLM3_60_b1_sep16_scaffold_149_27
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(28449..29672)
DNA (1224bp) protein (408aa)
Tax=RBG_13_Acidobacteria_68_16_curated
PLM3_60_b1_sep16_scaffold_149_28
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(29706..31331)
DNA (1626bp) protein (542aa)
Carboxyl-terminal protease Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X3J1_ACISM
carboxyl-terminal protease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM3_60_b1_sep16_scaffold_149_29
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

Not on your lists

comp(31556..32716)
DNA (1161bp) protein (387aa)
Cystathionine gamma-lyase (EC:4.4.1.1)
cystathionine gamma-synthase bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RBG_16_Zixibacteria_48_11_curated
PLM3_60_b1_sep16_scaffold_149_30
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

32868..33803
DNA (936bp) protein (312aa)
ABC transporter related Tax=Candidatus Methylomirabilis oxyfera RepID=D5MM13_9BACT
ABC transporter
Tax=RBG_16_RIF03_38_10_curated
Displaying items 1-30 of 59 in total

View Taxonomy