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PLM3_60_b1_sep16_scaffold_234

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_234_1
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

1..399
DNA (399bp) protein (133aa)
PE repeat family protein bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
TonB family protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM3_60_b1_sep16_scaffold_234_2
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

439..693
DNA (255bp) protein (85aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_234_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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811..1662
DNA (852bp) protein (284aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JY08_DESAC
acetyl-CoA carboxyl transferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3_60_b1_sep16_scaffold_234_4

Not on your lists

1659..2957
DNA (1299bp) protein (433aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
bifunctional folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Uncharacterized protein {ECO:0000313|EMBL:KKN63419.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_60_b1_sep16_scaffold_234_5
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

3100..4422
DNA (1323bp) protein (441aa)
nodulation protein NfeD Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B5B7B3
membrane-bound serine protease
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_234_6
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

4435..5187
DNA (753bp) protein (251aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53073.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
membrane protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
membrane protease subunit, stomatin/prohibitin
PLM3_60_b1_sep16_scaffold_234_7
Sulfurihydrogenibium azorense, Sulfurihydrogenibium, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

5184..5582
DNA (399bp) protein (133aa)
sigma-54 dependent transcriptional regulator/response regulator
ial:IALB_2429 Response regulator bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
Sigma-54 dependent transcriptional regulator/response regulator {ECO:0000313|EMBL:ACN99180.1}; species="Bacteria; Aquificae; Aquificales; Hydrogenothermaceae; Sulfurihydrogenibium.;" source="Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825).;"
PLM3_60_b1_sep16_scaffold_234_8
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

5582..6445
DNA (864bp) protein (288aa)
GAF/GGDEF domain protein bin=GWC2_Deltaproteobacteria_56_8 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
GAF/GGDEF domain-containing protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_234_9
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

6486..7613
DNA (1128bp) protein (376aa)
Putative uncharacterized protein Tax=uncultured bacterium 293 RepID=E3T607_9BACT
Zn finger domain-containing DnaJ-class molecular chaperone
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_234_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

7610..8341
DNA (732bp) protein (244aa)
Uncharacterized protein Tax=Oryza brachyantha RepID=J3L9M8_ORYBR
Mitochondrial K+-H+ exchange-related {ECO:0000313|EMBL:CDM66694.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM3_60_b1_sep16_scaffold_234_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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8456..9007
DNA (552bp) protein (184aa)
Arginine decarboxylase, pyruvoyl-dependent Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F7L3_ACIC5
pyruvoyl-dependent arginine decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3_60_b1_sep16_scaffold_234_12
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(9105..10520)
DNA (1416bp) protein (472aa)
adenylosuccinate lyase Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B34C23
adenylosuccinate lyase
Tax=AR11
PLM3_60_b1_sep16_scaffold_234_13
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

10885..12201
DNA (1317bp) protein (439aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Trigger factor (TF)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM3_60_b1_sep16_scaffold_234_14
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

12198..12830
DNA (633bp) protein (211aa)
ATP-dependent Clp protease proteolytic subunit Tax=Methylacidiphilum fumariolicum SolV RepID=I0JWJ2_9BACT
clpP; ATP-dependent Clp protease proteolytic subunit
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_234_15
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

13020..14267
DNA (1248bp) protein (416aa)
ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ATP-dependent Clp protease ATP-binding subunit ClpX
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_234_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

14429..16795
DNA (2367bp) protein (789aa)
Lon-A peptidase (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Lon-A peptidase (EC:3.4.21.53)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_b1_sep16_scaffold_234_17
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16805..17398
DNA (594bp) protein (198aa)
Probable GTP-binding protein EngB Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CP88_DESK7
GTP-binding protein engB
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
PLM3_60_b1_sep16_scaffold_234_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

17402..18655
DNA (1254bp) protein (418aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rho; transcription termination factor Rho; K03628 transcription termination factor Rho bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rho; transcription termination factor Rho
PLM3_60_b1_sep16_scaffold_234_19
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists


18811..19032
DNA (222bp) protein (74aa)
rpmE; LSU ribosomal protein L31p, zinc-dependent bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
rpmE; ribosomal protein L31
Tax=RBG_13_Aminicenantes_63_10_curated
PLM3_60_b1_sep16_scaffold_234_20
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

19062..20135
DNA (1074bp) protein (358aa)
Peptide chain release factor 1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=RF1_THEYD
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000255|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000255|HAMAP-Rule:MF_00093};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" source="Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 /; YP87).;"
PLM3_60_b1_sep16_scaffold_234_21
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20400..23027)
DNA (2628bp) protein (876aa)
M1 family peptidase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7ULY2_MYXSD
Membrane alanine aminopeptidase N {ECO:0000313|EMBL:KFE66124.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
M1 family peptidase
PLM3_60_b1_sep16_scaffold_234_22
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

23099..23926
DNA (828bp) protein (276aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
Release factor glutamine methyltransferase Tax=Roseiflexus sp. (strain RS-1) RepID=A5UZ30_ROSS1
HemK family modification methylase
PLM3_60_b1_sep16_scaffold_234_23
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

24114..25364
DNA (1251bp) protein (417aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V012_TERSS
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
PLM3_60_b1_sep16_scaffold_234_24
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

25595..25987
DNA (393bp) protein (131aa)
hypothetical protein Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI00035E784E
ycfF; HIT domain-containing protein
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM3_60_b1_sep16_scaffold_234_25
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26049..26423
DNA (375bp) protein (125aa)
NUDIX hydrolase Tax=Thermobrachium celere DSM 8682 RepID=R7RTH3_9CLOT
NUDIX hydrolase {ECO:0000313|EMBL:CDF58525.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
NUDIX hydrolase
PLM3_60_b1_sep16_scaffold_234_26
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(26375..27622)
DNA (1248bp) protein (416aa)
Glr0243 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NP15_GLOVI
hypothetical protein
Tax=GWA2_Ignavibacteria_54_16_curated
Displaying 26 items

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