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PLM3_60_b1_sep16_scaffold_718

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_718_1
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(1..2241)
DNA (2241bp) protein (747aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI000364B6FA
mutS2; MutS2 protein
PLM3_60_b1_sep16_scaffold_718_2
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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comp(2351..3094)
DNA (744bp) protein (248aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3_60_b1_sep16_scaffold_718_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(3091..5727)
DNA (2637bp) protein (879aa)
Peptidase S16B family protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA51_GEMAT
peptidase M16 domain protein
Peptidase M16 domain protein {ECO:0000313|EMBL:AHG91744.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM3_60_b1_sep16_scaffold_718_4
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

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comp(5761..7419)
DNA (1659bp) protein (553aa)
serine phosphatase bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine phosphatase RsbU
Tax=RBG_13_Aminicenantes_62_12_curated
PLM3_60_b1_sep16_scaffold_718_5
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(7490..8479)
DNA (990bp) protein (330aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Tryptophan--tRNA ligase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NL68_ROSCS
tryptophanyl-tRNA synthetase
PLM3_60_b1_sep16_scaffold_718_6
RLO_RIF03_38_15, RIF3, Bacteria

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comp(8479..9435)
DNA (957bp) protein (319aa)
putative peptidase M50 (EC:3.4.24.-)
peptidase M50 family protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
PLM3_60_b1_sep16_scaffold_718_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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comp(9471..9740)
DNA (270bp) protein (90aa)
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
histone family protein DNA-binding protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3_60_b1_sep16_scaffold_718_8
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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comp(9829..10122)
DNA (294bp) protein (98aa)
Uncharacterized protein bin=GWC2_Elusimicrobia_51_8 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
hypothetical protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_718_9
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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10331..11590
DNA (1260bp) protein (420aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
3-deoxy-D-manno-octulosonic-acid transferase
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_718_10
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

11544..12521
DNA (978bp) protein (326aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase Tax=uncultured Acidobacteria bacterium RepID=H5SH87_9BACT
PLM3_60_b1_sep16_scaffold_718_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12708..13361
DNA (654bp) protein (218aa)
Lipid A biosynthesis acyltransferase Tax=Geobacter sp. (strain M18) RepID=E8WSR3_GEOS8
lipid A biosynthesis acyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3_60_b1_sep16_scaffold_718_12
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

13431..14012
DNA (582bp) protein (194aa)
D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase (EC:3.1.3.-)
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000256|PIRNR:PIRNR004682}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR004682};; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Ilyobacter.;" source="Ilyobacter polytropus (strain DSM 2926 / CuHBu1).;"
D,D-heptose 1,7-bisphosphate phosphatase Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3H9V1_ILYPC
PLM3_60_b1_sep16_scaffold_718_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

14009..14749
DNA (741bp) protein (247aa)
ABC transporter, ATP-binding protein bin=GWC2_Nitrospirae_57_13 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
ABC transporter-like protein
Tax=RBG_16_Nitrospirae_64_22_curated
Displaying 13 items

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