ggKbase home page

PLM3_60_b1_sep16_scaffold_930

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_930_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

3..1394
DNA (1392bp) protein (464aa)
Glucokinase bin=GWC2_Nitrospirae_57_13 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
ROK family protein
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM3_60_b1_sep16_scaffold_930_2

Not on your lists

1667..2140
DNA (474bp) protein (158aa)
Putative uncharacterized protein Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KSQ1_ARCVS
Uncharacterized protein {ECO:0000313|EMBL:KKN37835.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_930_3
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists


comp(2375..3403)
DNA (1029bp) protein (343aa)
recombinase RecA Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000366CF64
recA; recA protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_930_4
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

3557..4762
DNA (1206bp) protein (402aa)
topA; DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase I {ECO:0000313|EMBL:AGY59939.1}; EC=5.99.1.2 {ECO:0000313|EMBL:AGY59939.1};; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
DNA topoisomerase I Tax=Gloeobacter kilaueensis JS1 RepID=U5QQP3_9CYAN
PLM3_60_b1_sep16_scaffold_930_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

4799..5287
DNA (489bp) protein (163aa)
Peptidoglycan-binding LysM Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021I7_SOLUE
peptidoglycan-binding LysM
Peptidoglycan-binding LysM {ECO:0000313|EMBL:ABJ84402.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_60_b1_sep16_scaffold_930_6
RBG_16_RIF03_38_11_curated, RIF3, Bacteria

Not on your lists

comp(5280..6662)
DNA (1383bp) protein (461aa)
Fumarate hydratase class II bin=GWA2_Planctomycetia_40_7 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
fumarate lyase
Tax=RBG_16_RIF03_38_11_curated
PLM3_60_b1_sep16_scaffold_930_7
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6816..7259)
DNA (444bp) protein (148aa)
Uncharacterized protein Tax=Flavobacterium cauense R2A-7 RepID=V6S3U5_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU21331.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_930_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(7292..9898)
DNA (2607bp) protein (869aa)
serine/threonine protein kinase (EC:2.7.10.2)
Serine/threonine protein kinase PrkC, regulator of stationary phase Tax=Thermobrachium celere DSM 8682 RepID=R7RNW5_9CLOT
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM3_60_b1_sep16_scaffold_930_9
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10026..12467)
DNA (2442bp) protein (814aa)
Peptidase, S8 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08XF4_STIAD
Alkaline serine exoprotease A {ECO:0000313|EMBL:KFE66052.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
peptidase, s8
PLM3_60_b1_sep16_scaffold_930_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12568..13128)
DNA (561bp) protein (187aa)
Kelch repeat-containing protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX14350.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
PLM3_60_b1_sep16_scaffold_930_11
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13664..13942)
DNA (279bp) protein (93aa)
Antitoxin, Phd family bin=GWB2_Proteobacteria_55_19 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
Tax=BJP_IG2069_Syntrophobacterales_46_30
PLM3_60_b1_sep16_scaffold_930_12
Rivularia sp. PCC 7116, Rivularia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(14093..14926)
DNA (834bp) protein (278aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily Tax=Rivularia sp. PCC 7116 RepID=K9R8X8_9CYAN
alpha/beta hydrolase
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:AFY54350.1}; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Rivularia.;" source="Rivularia sp. PCC 7116.;"
PLM3_60_b1_sep16_scaffold_930_13
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

comp(15227..17140)
DNA (1914bp) protein (638aa)
sulfatase bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
arylsulfatase
Tax=RBG_13_Aminicenantes_62_12_curated
PLM3_60_b1_sep16_scaffold_930_14
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(17137..19176)
DNA (2040bp) protein (680aa)
sulfatase bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
sulfatase
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
Displaying 14 items

View Taxonomy