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PLM3_60_b1_sep16_scaffold_2437

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_2437_1
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3..365)
DNA (363bp) protein (121aa)
Tax=RBG_16_Deltaproteobacteria_64_85_curated
PLM3_60_b1_sep16_scaffold_2437_2
R_WOR_2_68_15, WOR-2, Bacteria

Not on your lists

456..1556
DNA (1101bp) protein (367aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4R5_GEOUR
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
PLM3_60_b1_sep16_scaffold_2437_3
RBG_16_OP11_45_19_curated, Microgenomates, Bacteria

Not on your lists

comp(1832..2206)
DNA (375bp) protein (125aa)
Response regulator receiver Tax=delta proteobacterium MLMS-1 RepID=Q1NII8_9DELT
histidine kinase
Tax=RBG_16_OP11_45_19_curated
PLM3_60_b1_sep16_scaffold_2437_4
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2273..4489)
DNA (2217bp) protein (739aa)
Methyltransferase type 12 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NHW8_DESAR
methyltransferase type 12
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM3_60_b1_sep16_scaffold_2437_5
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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4658..5026
DNA (369bp) protein (123aa)
Putative response regulator (CheY-like) Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W6W7_UNCMA
putative response regulator (CheY-like)
Putative response regulator (CheY-like) {ECO:0000313|EMBL:CAJ35876.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
PLM3_60_b1_sep16_scaffold_2437_6
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(5213..5623)
DNA (411bp) protein (137aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X3I4_ACISM
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ADW68175.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
PLM3_60_b1_sep16_scaffold_2437_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

5639..6349
DNA (711bp) protein (237aa)
Short-chain dehydrogenase/reductase SDR Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BDR9_MEISD
Uncharacterized protein {ECO:0000313|EMBL:CDM66293.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
short-chain dehydrogenase/reductase SDR
PLM3_60_b1_sep16_scaffold_2437_8
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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comp(6529..7005)
DNA (477bp) protein (159aa)
Putative acetyltransferase bin=GWF2_Lentisphaerae_50_93 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
PLM3_60_b1_sep16_scaffold_2437_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(7002..9356)
DNA (2355bp) protein (785aa)
Serine/threonine protein kinase with TPR repeats Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISU5_KORVE
serine/threonin protein kinase
Serine/threonine protein kinase with TPR repeats {ECO:0000313|EMBL:ABF40055.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3_60_b1_sep16_scaffold_2437_10
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(9520..10329)
DNA (810bp) protein (270aa)
TIGR00268 family protein Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F4C0_DESDL
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3_60_b1_sep16_scaffold_2437_11
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(10326..11327)
DNA (1002bp) protein (334aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
Thiamine-monophosphate kinase Tax=uncultured Acidobacteria bacterium RepID=H5SQ06_9BACT
thiamine-monophosphate kinase
PLM3_60_b1_sep16_scaffold_2437_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

11437..11865
DNA (429bp) protein (143aa)
anti-sigma regulatory factor (EC:2.7.11.1) bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
anti-sigma regulatory factor (EC:2.7.11.1)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_b1_sep16_scaffold_2437_13
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

11862..12764
DNA (903bp) protein (301aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54484.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=uncultured bacterium 293 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Zn finger domain-containing DnaJ-class molecular chaperone
PLM3_60_b1_sep16_scaffold_2437_14
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12715..13704
DNA (990bp) protein (330aa)
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5)
NADH-quinone oxidoreductase, F subunit {ECO:0000313|EMBL:ABR62432.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ABR62432.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
NADH dehydrogenase subunit F Tax=Rhizobium meliloti RepID=UPI00030C76AA
PLM3_60_b1_sep16_scaffold_2437_15

Not on your lists

13923..14699
DNA (777bp) protein (259aa)
Uncharacterized protein Tax=uncultured bacterium FPPP_13C3 RepID=S4W4H2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGO87987.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium FPPP_13C3.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_2437_16
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14775..15530)
DNA (756bp) protein (252aa)
long-chain-fatty-acid--CoA ligase (EC:2.3.1.86)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II Tax=Frankia sp. QA3 RepID=I9A7B0_9ACTO
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EIV95371.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
PLM3_60_b1_sep16_scaffold_2437_17
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15511..15960)
DNA (450bp) protein (150aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI00037EF3D6
AMP-dependent synthetase and ligase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
Displaying 17 items

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