ggKbase home page

PLM3_60_b1_sep16_scaffold_2591

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_2591_1
unknown

Not on your lists

comp(1..156)
DNA (156bp) protein (52aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_2591_2
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

comp(252..1157)
DNA (906bp) protein (302aa)
Periplasmic binding protein Tax=uncultured candidate division OP1 bacterium RepID=H5SLS3_9BACT
Periplasmic binding protein {ECO:0000313|EMBL:BAL58818.1}; species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
periplasmic binding protein
PLM3_60_b1_sep16_scaffold_2591_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

1276..3081
DNA (1806bp) protein (602aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Elongation factor 4 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJK0_9BACT
GTP-binding protein LepA
PLM3_60_b1_sep16_scaffold_2591_4
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

3086..3760
DNA (675bp) protein (225aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI00037CDB44
lepB; signal peptidase I
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_2591_5
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

3760..4167
DNA (408bp) protein (136aa)
Transcriptional regulator Tax=Bacillus thuringiensis RepID=C3IVB9_BACTU
DNA recombination protein RmuC
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_2591_6
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

4200..5249
DNA (1050bp) protein (350aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRF2_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40548.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3_60_b1_sep16_scaffold_2591_7
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(5290..5799)
DNA (510bp) protein (170aa)
Tax=RBG_13_Chloroflexi_66_10_curated
PLM3_60_b1_sep16_scaffold_2591_8
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5843..6286)
DNA (444bp) protein (148aa)
Putative uncharacterized protein Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KBS7_NITWC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ27688.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
PLM3_60_b1_sep16_scaffold_2591_9
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6543..7304
DNA (762bp) protein (254aa)
Undecaprenyl-diphosphatase bin=GWF2_OP3_38_59 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
Undecaprenyl-diphosphatase
Tax=BJP_IG2102_Syntrophobacterales_60_12
PLM3_60_b1_sep16_scaffold_2591_10
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7374..8789)
DNA (1416bp) protein (472aa)
Uncharacterized protein Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KP66_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPC03705.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
FAD linked oxidase domain-containing protein
PLM3_60_b1_sep16_scaffold_2591_11
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

9063..10580
DNA (1518bp) protein (506aa)
Uncharacterized protein bin=GWC2_Ignavibacteria_38_9 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
hypothetical protein
Tax=RBG_13_RIF03_48_7_curated
PLM3_60_b1_sep16_scaffold_2591_12
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(10949..11950)
DNA (1002bp) protein (334aa)
phosphate transporter; K03306 inorganic phosphate transporter, PiT family bin=bin3_NC10 species=Hyphomicrobium zavarzinii genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
phosphate transporter
Tax=CSP1_5_NC10
PLM3_60_b1_sep16_scaffold_2591_13
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(11954..12580)
DNA (627bp) protein (209aa)
Uncharacterized protein bin=GWA2_Elusimicrobia_69_24 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
phosphate transport regulator
Tax=GWA2_Elusimicrobia_69_24_curated
PLM3_60_b1_sep16_scaffold_2591_14
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(12724..14364)
DNA (1641bp) protein (547aa)
Alkaline phosphatase synthesis sensor protein PhoR Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G7H8_9DELT
phoR; phosphate sensor histidine kinase, HAMP and PAS domain-containing
Tax=RBG_16_Zixibacteria_43_9_curated
PLM3_60_b1_sep16_scaffold_2591_15
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14844..15101
DNA (258bp) protein (86aa)
Peptidase Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FZ52_STIAD
peptidase
Peptidase {ECO:0000313|EMBL:ADO73687.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
PLM3_60_b1_sep16_scaffold_2591_16
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15833..16045)
DNA (213bp) protein (71aa)
Putative uncharacterized protein Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VG10_CAUST
Uncharacterized protein {ECO:0000313|EMBL:KGT81433.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_2591_17
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16228..16605)
DNA (378bp) protein (126aa)
hypothetical protein Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI000363CEA5
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:AEE44652.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
PLM3_60_b1_sep16_scaffold_2591_18
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16862..17788)
DNA (927bp) protein (309aa)
Uncharacterized protein Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R8R3_PHEZH
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
PLM3_60_b1_sep16_scaffold_2591_19
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

17941..18912
DNA (972bp) protein (324aa)
cystathionine beta-synthase (EC:4.2.1.22)
Cystathionine beta-synthase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM2_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_2591_20
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

19033..19320
DNA (288bp) protein (96aa)
Uncharacterized protein bin=GWF2_Lentisphaerae_57_35 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
Tax=RBG_13_Planctomycetes_62_9_curated
PLM3_60_b1_sep16_scaffold_2591_21
unknown

Not on your lists

19514..19669
DNA (156bp) protein (52aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_2591_22
GWA2_OP3_50_21_curated, Omnitrophica, Bacteria

Not on your lists

19770..21638
DNA (1869bp) protein (623aa)
TonB-dependent receptor plug Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E2Z7_GEOLS
TonB-dependent receptor plug
Tax=GWA2_OP3_50_21_curated
PLM3_60_b1_sep16_scaffold_2591_23
GWC2_Elusimicrobia_56_31_curated, Elusimicrobia, Bacteria

Not on your lists

21604..22545
DNA (942bp) protein (314aa)
Periplasmic binding protein bin=GWA2_Elusimicrobia_56_46 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
ABC transporter substrate-binding protein
Tax=GWC2_Elusimicrobia_56_31_curated
PLM3_60_b1_sep16_scaffold_2591_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

22542..23714
DNA (1173bp) protein (391aa)
Periplasmic binding protein bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC-type transporter, periplasmic subunit
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_b1_sep16_scaffold_2591_25
uncultured Acetothermia bacterium, Acetothermia, Bacteria

Not on your lists

23815..24240
DNA (426bp) protein (142aa)
Iron complex transport system permease protein Tax=uncultured candidate division OP1 bacterium RepID=H5SI82_9BACT
Iron complex transport system permease protein {ECO:0000313|EMBL:BAL55868.1}; species="Bacteria; Acetothermia; environmental samples.;" source="uncultured Acetothermia bacterium.;"
yvrB; putative iron transport system permease protein YvrB
PLM3_60_b1_sep16_scaffold_2591_26
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

25526..25981
DNA (456bp) protein (152aa)
Thiolspecific antioxidant protein Tax=Leptospirillum ferrooxidans (strain C2-3) RepID=I0IQC8_LEPFC
thiolspecific antioxidant protein
Tax=RBG_16_Zixibacteria_43_9_curated
PLM3_60_b1_sep16_scaffold_2591_27
unknown

Not on your lists

comp(26227..26358)
DNA (132bp) protein (44aa)

This feature has no annotations

Displaying 27 items

View Taxonomy