ggKbase home page

PLM3_60_b1_sep16_scaffold_2900

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_2900_1
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

66..581
DNA (516bp) protein (172aa)
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_2900_2
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

662..907
DNA (246bp) protein (82aa)
Prevent-host-death protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1INB2_KORVE
prevent-host-death protein
Prevent-host-death protein {ECO:0000313|EMBL:ABF41638.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3_60_b1_sep16_scaffold_2900_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

904..1302
DNA (399bp) protein (133aa)
PilT protein domain protein Tax=Chloroflexus RepID=A9WFW2_CHLAA
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_b1_sep16_scaffold_2900_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

1550..1942
DNA (393bp) protein (131aa)
Serine/threonine protein kinase with TPR repeats Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIA4_KORVE
serine/threonin protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_b1_sep16_scaffold_2900_5
RBG_19FT_COMBO_Aminicenantes_59_29_curated, Aminicenantes, Bacteria

Not on your lists

2063..3838
DNA (1776bp) protein (592aa)
TPR repeat-containing serine/threonin protein kinase bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
TolB domain-containing protein
Tax=RBG_19FT_COMBO_Aminicenantes_59_29_curated
PLM3_60_b1_sep16_scaffold_2900_6
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3884..4417)
DNA (534bp) protein (178aa)
Transcriptional regulator, AraC family protease, putative Tax=Microscilla marina ATCC 23134 RepID=A1ZKW0_9BACT
Transcriptional regulator, AraC family protease, putative {ECO:0000313|EMBL:EAY28926.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
glutamine amidotransferase
PLM3_60_b1_sep16_scaffold_2900_7
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(4414..5412)
DNA (999bp) protein (333aa)
Galactose-1-phosphate uridylyltransferase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUV2_KORVE
galactose-1-phosphate uridylyltransferase
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_2900_8

Not on your lists

comp(5459..5812)
DNA (354bp) protein (118aa)
Marine sediment metagenome DNA, contig: S01H4_S20298 {ECO:0000313|EMBL:GAH14391.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
UPF0102 protein SYNAS_23220 bin=GWC2_Deltaproteobacteria_56_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
hypothetical protein
PLM3_60_b1_sep16_scaffold_2900_9
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(5809..7194)
DNA (1386bp) protein (462aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI00035CC64C
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_2900_10
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(7181..8269)
DNA (1089bp) protein (363aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI000379DED8
Hexosyltransferase
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_2900_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(8410..9486)
DNA (1077bp) protein (359aa)
Glycosyltransferase (EC:2.4.1.-)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI000378B2FE
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_b1_sep16_scaffold_2900_12
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(9494..10594)
DNA (1101bp) protein (367aa)
glycosyltransferase bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
Glycosyltransferase
Tax=RBG_16_Aminicenantes_63_16_curated
PLM3_60_b1_sep16_scaffold_2900_13
RBG_19FT_COMBO_Aminicenantes_59_29_curated, Aminicenantes, Bacteria

Not on your lists

comp(10730..11899)
DNA (1170bp) protein (390aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Hexosyltransferase
Tax=RBG_19FT_COMBO_Aminicenantes_59_29_curated
PLM3_60_b1_sep16_scaffold_2900_14
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(11957..12541)
DNA (585bp) protein (195aa)
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_2900_15
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

comp(12578..13519)
DNA (942bp) protein (314aa)
Putative conserved membrane protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
UbiA prenyltransferase
Tax=RBG_16_Zixibacteria_50_21_curated
PLM3_60_b1_sep16_scaffold_2900_16
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(13681..13947)
DNA (267bp) protein (89aa)
Uncharacterized protein Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V627_TERSS
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3_60_b1_sep16_scaffold_2900_17
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

14104..15372
DNA (1269bp) protein (423aa)
Uncharacterized methyltransferase PH0819 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=Y819_PYRHO
methyltransferase
Tax=RBG_13_Nitrospirae_41_22_curated
PLM3_60_b1_sep16_scaffold_2900_trna_1
unknown

Not on your lists

comp(15497..15582)
DNA (86bp)
transferRNA Leu
PLM3_60_b1_sep16_scaffold_2900_18
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15665..15970
DNA (306bp) protein (102aa)
Uncharacterized protein Tax=Thauera sp. 63 RepID=N6YAM7_9RHOO
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
Displaying 19 items

View Taxonomy