ggKbase home page

PLM3_60_b1_sep16_scaffold_1452

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_1452_1
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3..299
DNA (297bp) protein (99aa)
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GR24_9CYAN
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB {ECO:0000313|EMBL:EKQ71060.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanobacterium JSC-12.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_1452_2
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

296..1102
DNA (807bp) protein (269aa)
Uncharacterized protein Tax=Crinalium epipsammum PCC 9333 RepID=K9W3P1_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ14030.1}; Flags: Precursor;; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Crinalium.;" source="Crinalium epipsammum PCC 9333.;"
PLM3_60_b1_sep16_scaffold_1452_3
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

1152..1496
DNA (345bp) protein (115aa)
Uncharacterized protein Tax=Microcoleus sp. PCC 7113 RepID=K9W8S2_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ16149.1}; Flags: Precursor;; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
PLM3_60_b1_sep16_scaffold_1452_4
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

1798..3093
DNA (1296bp) protein (432aa)
SpoIID/LytB domain protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
SpoIID/LytB domain-containing protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_1452_5
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

3134..4021
DNA (888bp) protein (296aa)
SpoIID/LytB domain-containing protein; K06381 stage II sporulation protein D bin=RBG_16_Aminicenantes_63_14 tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
SpoIID/LytB domain-containing protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_1452_6
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

4090..4713
DNA (624bp) protein (208aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=uncultured bacterium 293 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Zn finger domain-containing DnaJ-class molecular chaperone
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_1452_7
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

4685..5092
DNA (408bp) protein (136aa)
id=8266874 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_1452_8
unknown

Not on your lists

5226..5543
DNA (318bp) protein (106aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1452_9
unknown

Not on your lists

comp(5406..5753)
DNA (348bp) protein (116aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1452_10
Thermocrinis ruber, Thermocrinis, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

6011..6451
DNA (441bp) protein (147aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; species="Bacteria; Aquificae; Aquificales; Aquificaceae; Thermocrinis.;" source="Thermocrinis ruber DSM 12173.;"
tRNA dimethylallyltransferase Tax=Cyanobacterium aponinum (strain PCC 10605) RepID=K9Z6B4_CYAAP
tRNA delta(2)-isopentenylpyrophosphate transferase
PLM3_60_b1_sep16_scaffold_1452_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6688..7164)
DNA (477bp) protein (159aa)
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3_60_b1_sep16_scaffold_1452_12
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(7151..7366)
DNA (216bp) protein (72aa)
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_1452_13
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

7586..8722
DNA (1137bp) protein (379aa)
phosphoserine aminotransferase/L-aspartate aminotransferase (EC:2.6.1.1 2.6.1.52)
Phosphoserine aminotransferase / L-aspartate aminotransferase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028A7_SOLUE
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
PLM3_60_b1_sep16_scaffold_1452_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

8726..10321
DNA (1596bp) protein (532aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YKK8_THEYD
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3_60_b1_sep16_scaffold_1452_15
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10758..12095)
DNA (1338bp) protein (446aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JY46_DESAC
sigma-54 dependent DNA-binding response regulator
Tax=GWD2_Desulfuromonadales_61_12_curated
PLM3_60_b1_sep16_scaffold_1452_16
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(12107..12976)
DNA (870bp) protein (290aa)
UDP-glucose pyrophosphorylase (EC:2.7.7.9)
UDP-glucose pyrophosphorylase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A85_SOLUE
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3_60_b1_sep16_scaffold_1452_17
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13087..13494)
DNA (408bp) protein (136aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
Ribosomal RNA small subunit methyltransferase E Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LZ50_GEODF
16S ribosomal RNA methyltransferase RsmE
PLM3_60_b1_sep16_scaffold_1452_18
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(13773..14909)
DNA (1137bp) protein (379aa)
molecular chaperone DnaJ
dnaJ; chaperone protein DnaJ; K03686 molecular chaperone DnaJ bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_1452_19
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(14913..16733)
DNA (1821bp) protein (607aa)
Chaperone protein DnaK Tax=uncultured Desulfobacterium sp. RepID=E1YDX7_9DELT
chaperone protein DnaK
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_1452_20
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(16712..17437)
DNA (726bp) protein (242aa)
Protein GrpE Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CPX5_DESK7
protein grpE
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_1452_21
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17440..18432)
DNA (993bp) protein (331aa)
Heat-inducible transcription repressor hrcA Tax=Geobacter sp. (strain M21) RepID=C6E645_GEOSM
heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
PLM3_60_b1_sep16_scaffold_1452_22
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18671..19324)
DNA (654bp) protein (218aa)
Methenyltetrahydrofolate cyclohydrolase {ECO:0000313|EMBL:CEO89681.1}; EC=3.5.4.9 {ECO:0000313|EMBL:CEO89681.1};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
fcha; methenyltetrahydrofolate cyclohydrolase Fcha (EC:3.5.4.9)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI000371AD8F
PLM3_60_b1_sep16_scaffold_1452_23
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(19297..20520)
DNA (1224bp) protein (408aa)
hutI; imidazolonepropionase HutI (EC:3.5.2.7)
Imidazolonepropionase bin=GWA2_Ignavibacteria-rel_35_8 species=Pyramidobacter piscolens genus=Pyramidobacter taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_60_b1_sep16_scaffold_1452_24

Not on your lists

comp(20517..20771)
DNA (255bp) protein (85aa)
Putative uncharacterized protein Tax=sediment metagenome RepID=D9PI94_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:EFK96725.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_1452_25
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(20782..21282)
DNA (501bp) protein (167aa)
Cell-division initiation protein Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YHK2_THEYD
cell-division initiation protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_1452_26
GWC2_Deltaproteobacteria_42_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21291..21605)
DNA (315bp) protein (105aa)
hypothetical protein; K02221 YggT family protein bin=bin3_NC10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=GWC2_Deltaproteobacteria_42_11_curated
PLM3_60_b1_sep16_scaffold_1452_27
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(21618..22295)
DNA (678bp) protein (226aa)
hypothetical protein Tax=Thermodesulfatator atlanticus RepID=UPI0003B6D507
yggS; hypothetical protein
Putative enzyme {ECO:0000313|EMBL:CBE69340.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3_60_b1_sep16_scaffold_1452_28
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22393..24450
DNA (2058bp) protein (686aa)
hypothetical protein Tax=Rhizobium radiobacter RepID=UPI0003730887
Uncharacterized protein {ECO:0000313|EMBL:KDR90245.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_1452_29
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24600..25253
DNA (654bp) protein (218aa)
Thymidylate kinase Tax=uncultured Desulfobacterium sp. RepID=E1YCQ5_9DELT
tmk-1; thymidylate kinase
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
PLM3_60_b1_sep16_scaffold_1452_30
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25250..26257
DNA (1008bp) protein (336aa)
DNA polymerase III, delta prime subunit Tax=Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) RepID=F6B3Y1_DESCC
DNA polymerase III subunit delta'
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
Displaying items 1-30 of 32 in total

View Taxonomy