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PLM3_60_b1_sep16_scaffold_1482

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_1482_1
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(1..174)
DNA (174bp) protein (58aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000313|EMBL:CBK43693.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Cysteine desulfurase Tax=Candidatus Nitrospira defluvii RepID=D8P861_9BACT
PLM3_60_b1_sep16_scaffold_1482_2
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(167..691)
DNA (525bp) protein (175aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Peptide deformylase; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
Peptide deformylase Tax=uncultured Acidobacteria bacterium RepID=H5SCK1_9BACT
peptide deformylase
PLM3_60_b1_sep16_scaffold_1482_3
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(691..1143)
DNA (453bp) protein (151aa)
Rrf2 family transcriptional regulator Tax=Geovibrio thiophilus RepID=UPI0003B6AC38
AsnC family transcriptional regulator
Tax=CG_Delta_01
PLM3_60_b1_sep16_scaffold_1482_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(1213..1821)
DNA (609bp) protein (203aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D5B0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18315.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_1482_5
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(1922..2488)
DNA (567bp) protein (189aa)
Metal dependent phosphohydrolase Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WTK7_KYRT2
metal dependent phosphohydrolase
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3_60_b1_sep16_scaffold_1482_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(2571..2756)
DNA (186bp) protein (62aa)
PspC domain protein Tax=Bacteroides faecis CAG:32 RepID=R6W6C0_9BACE
phage shock protein c, pspc
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_b1_sep16_scaffold_1482_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(2783..3484)
DNA (702bp) protein (234aa)
Lipoyl synthase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=LIPA_RUBXD
lipoyl synthase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3_60_b1_sep16_scaffold_1482_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3751..4251)
DNA (501bp) protein (167aa)
4Fe-4S ferredoxin; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_60_b1_sep16_scaffold_1482_9
R_Omnitrophica_45_10b, Omnitrophica, Bacteria

Not on your lists

comp(4271..5359)
DNA (1089bp) protein (363aa)
nuoH_[H]; NADH-ubiquinone oxidoreductase chain H (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit H Tax=uncultured bacterium RepID=D6CJW5_9BACT
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_45_10b_curated
PLM3_60_b1_sep16_scaffold_1482_10
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(5359..6990)
DNA (1632bp) protein (544aa)
NADH dehydrogenase subunit G Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B681AB
Molybdopterin oxidoreductase Fe4S4 region
Tax=CG_Arma_02
PLM3_60_b1_sep16_scaffold_1482_11
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(6992..8347)
DNA (1356bp) protein (452aa)
NADH dehydrogenase I subunit D (EC:1.6.99.5)
NADH dehydrogenase subunit D Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B62217
Tax=CG_Arma_02
PLM3_60_b1_sep16_scaffold_1482_12
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8340..8816)
DNA (477bp) protein (159aa)
NADH-quinone oxidoreductase subunit C bin=GWA2_Elusi-like_A8_64_40 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Elusi-like_A8_64_40 organism_group=Elusimicrobia
NADH (or F420H2) dehydrogenase subunit C
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_b1_sep16_scaffold_1482_13
R_Omnitrophica_45_10b, Omnitrophica, Bacteria

Not on your lists

comp(8828..9304)
DNA (477bp) protein (159aa)
nuoB; NADH-quinone oxidoreductase chain B (EC:1.6.99.5)
NADH dehydrogenase subunit B Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B3F63A
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_45_10b_curated
PLM3_60_b1_sep16_scaffold_1482_14
R_WOR_2_68_15, WOR-2, Bacteria

Not on your lists

comp(9295..9639)
DNA (345bp) protein (115aa)
NADH-quinone oxidoreductase subunit A bin=GWC2_Proteo_65_14_Ab886 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
putative NADH dehydrogenase I subunit A
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
PLM3_60_b1_sep16_scaffold_1482_15
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9724..10716)
DNA (993bp) protein (331aa)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
Selenide, water dikinase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RB40_AMMDK
selenide, water dikinase
PLM3_60_b1_sep16_scaffold_1482_16
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

11064..11879
DNA (816bp) protein (272aa)
ABC transporter related-protein Tax=Pedosphaera parvula Ellin514 RepID=B9XRW1_9BACT
ABC transporter-like protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_60_b1_sep16_scaffold_1482_17
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

11889..12194
DNA (306bp) protein (102aa)
Dioxygenase, ferredoxin subunit Tax=Candidatus Nitrospira defluvii RepID=D8PG05_9BACT
dioxygenase, ferredoxin subunit
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_1482_18
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(12481..13485)
DNA (1005bp) protein (335aa)
Putative esterase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEJ0_THET1
putative esterase
Putative esterase {ECO:0000313|EMBL:ACZ41346.1}; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM3_60_b1_sep16_scaffold_1482_19
unknown

Not on your lists

comp(13491..14075)
DNA (585bp) protein (195aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1482_20
unknown

Not on your lists

comp(14117..14806)
DNA (690bp) protein (230aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1482_21
unknown

Not on your lists

comp(15038..15169)
DNA (132bp) protein (44aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1482_22
unknown

Not on your lists

15408..15536
DNA (129bp) protein (43aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1482_23
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15543..16919
DNA (1377bp) protein (459aa)
beta-Casp domain-containing protein Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI00039C7547
Metallo-beta-lactamase family protein, RNA-specific
Metallo-beta-lactamase family protein, RNA-specific {ECO:0000313|EMBL:AGH98729.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus EPB.;"
PLM3_60_b1_sep16_scaffold_1482_24
unknown

Not on your lists

16916..17338
DNA (423bp) protein (141aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1482_25
RIFOXYC2_FULL_OD1_Uhrbacteria_47_19_curated, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(17470..18996)
DNA (1527bp) protein (509aa)
hypothetical protein Tax=Nitrospina sp. AB-629-B06 RepID=UPI0003759D2B
thymidylate synthase
Tax=RIFOXYC2_FULL_OD1_Uhrbacteria_47_19_curated
PLM3_60_b1_sep16_scaffold_1482_26
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(19114..21282)
DNA (2169bp) protein (723aa)
ribonucleoside-diphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
ribonucleoside-diphosphate reductase (EC:1.17.4.1)
Tax=CSP1_5_NC10
PLM3_60_b1_sep16_scaffold_1482_27
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21535..22788
DNA (1254bp) protein (418aa)
PKD domain containing protein Tax=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) RepID=B9LW00_HALLT
Uncharacterized protein {ECO:0000313|EMBL:KDP91499.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter cf. michiganensis LMG 26808.;"
PKD domain containing protein
PLM3_60_b1_sep16_scaffold_1482_28
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22800..23786)
DNA (987bp) protein (329aa)
Putative DNA recombination protein bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
PLM3_60_b1_sep16_scaffold_1482_29
CSP1_5_NC10, NC10, Bacteria

Not on your lists

23945..24739
DNA (795bp) protein (265aa)
short-chain dehydrogenase/reductase SDR bin=bin3_NC10 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
short-chain dehydrogenase/reductase SDR
Tax=CSP1_5_NC10
PLM3_60_b1_sep16_scaffold_1482_30
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

24858..25535
DNA (678bp) protein (226aa)
id=12554158 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RBG_13_OP8X_37_8_curated
Displaying items 1-30 of 51 in total

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