ggKbase home page

PLM3_60_b1_sep16_scaffold_1174

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_1174_1
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(2..244)
DNA (243bp) protein (81aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PGR8_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_1174_trna_1
unknown

Not on your lists

comp(482..565)
DNA (84bp)
transferRNA Leu
PLM3_60_b1_sep16_scaffold_1174_2
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

705..983
DNA (279bp) protein (93aa)
Putative Fe(2+)-trafficking protein YggX Tax=Candidatus Nitrospira defluvii RepID=D8PGR9_9BACT
putative fe(2+)-trafficking protein YggX
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_1174_3
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

1121..1576
DNA (456bp) protein (152aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PGS0_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_1174_4
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

1593..2090
DNA (498bp) protein (166aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PGS1_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_1174_5
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists


2122..2550
DNA (429bp) protein (143aa)
50S ribosomal protein L13 Tax=Candidatus Nitrospira defluvii RepID=D8PGS2_9BACT
rplM; 50S ribosomal protein L13
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_1174_6
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


2585..2977
DNA (393bp) protein (131aa)
30S ribosomal protein S9 Tax=Candidatus Nitrospira defluvii RepID=D8PGS3_9BACT
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_1174_7
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

3060..4133
DNA (1074bp) protein (358aa)
argC; n-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
N-acetyl-gamma-glutamyl-phosphate reductase Tax=Candidatus Nitrospira defluvii RepID=D8PGS4_9BACT
PLM3_60_b1_sep16_scaffold_1174_8
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

4166..5389
DNA (1224bp) protein (408aa)
argJ; arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.35 2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ Tax=Candidatus Nitrospira defluvii RepID=D8PGS5_9BACT
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106, ECO:0000313|EMBL:CBK42462.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_1174_9
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

6002..6226
DNA (225bp) protein (75aa)
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_1174_10
unknown

Not on your lists

comp(6401..6604)
DNA (204bp) protein (68aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1174_11
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(6680..7075)
DNA (396bp) protein (132aa)
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_1174_12
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(7110..7730)
DNA (621bp) protein (207aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PCS6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK41035.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_1174_13
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7799..8359)
DNA (561bp) protein (187aa)
Peptidoglycan-associated lipoprotein bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
outer membrane lipoprotein omp16 (peptidoglycan-associated lipoprotein)
Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
PLM3_60_b1_sep16_scaffold_1174_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

8521..10236
DNA (1716bp) protein (572aa)
lnt; apolipoprotein N-acyltransferase (EC:2.3.1.-)
Apolipoprotein N-acyltransferase {ECO:0000256|SAAS:SAAS00250216, ECO:0000313|EMBL:CBK41775.1}; EC=2.3.1.- {ECO:0000256|SAAS:SAAS00088950, ECO:0000313|EMBL:CBK41775.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Apolipoprotein N-acyltransferase Tax=Candidatus Nitrospira defluvii RepID=D8PEW6_9BACT
PLM3_60_b1_sep16_scaffold_1174_15
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

10336..10689
DNA (354bp) protein (118aa)
Peptide chain release factor 2 Tax=Candidatus Nitrospira defluvii RepID=D8PEW5_9BACT
prfB; peptide chain release factor 2
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Displaying 16 items

View Taxonomy