ggKbase home page

PLM3_60_coex_sep16_scaffold_27

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_27_1
unknown

Not on your lists

comp(3..230)
DNA (228bp) protein (76aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_27_trna_1
unknown

Not on your lists

comp(322..393)
DNA (72bp)
transferRNA Gly
PLM3_60_coex_sep16_scaffold_27_2
R_Chlamydiae_45_22, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

633..1877
DNA (1245bp) protein (415aa)
hypothetical protein Tax=alpha proteobacterium SCGC AAA158-B04 RepID=UPI00036885B9
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Chlamydiae_45_22_curated
PLM3_60_coex_sep16_scaffold_27_3
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1874..2413
DNA (540bp) protein (180aa)
DNA-binding protein Tax=Fodinicurvata sediminis RepID=UPI0003B46EFF
YbaK/prolyl-tRNA synthetase associated region {ECO:0000313|EMBL:EDP62831.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_27_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2517..3446
DNA (930bp) protein (310aa)
Thioredoxin domain-containing protein Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2WBG4_MAGSA
Thioredoxin {ECO:0000313|EMBL:KGM35806.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
thioredoxin domain-containing protein
PLM3_60_coex_sep16_scaffold_27_5
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3468..4130
DNA (663bp) protein (221aa)
lonD; ATP-dependent protease La domain-containing protein LonD (EC:3.4.21.53)
ATP-dependent protease La domain protein LonD Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IUQ5_RHOCS
Peptidase S16 {ECO:0000313|EMBL:EWY42410.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
PLM3_60_coex_sep16_scaffold_27_6
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4140..4340
DNA (201bp) protein (67aa)
UPF0434 protein PHZ_c0021 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RBH5_PHEZH
lpxK; tetraacyldisaccharide-1-P 4-kinase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
PLM3_60_coex_sep16_scaffold_27_7
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4340..4717
DNA (378bp) protein (126aa)
Uncharacterized protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z9E5_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS87591.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
PLM3_60_coex_sep16_scaffold_27_8
Aphanizomenon flos-aquae, Aphanizomenon, Nostocales, Cyanobacteria, Bacteria

Not on your lists

4761..5678
DNA (918bp) protein (306aa)
Phytanoyl-CoA dioxygenase family Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VLD5_9CYAN
Mitomycin antibiotic biosynthesis protein {ECO:0000313|EMBL:KHG42550.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Aphanizomenon.;" source="Aphanizomenon flos-aquae 2012/KM1/D3.;"
Phytanoyl-CoA dioxygenase
PLM3_60_coex_sep16_scaffold_27_9
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5734..6510)
DNA (777bp) protein (259aa)
Short-chain dehydrogenase/reductase SDR Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11BS5_MESSB
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABG65150.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
PLM3_60_coex_sep16_scaffold_27_10
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(6524..7294)
DNA (771bp) protein (257aa)
sorbitol dehydrogenase (EC:1.1.99.21)
Product Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9QXH5_9RHOB
Tax=RBG_16_Aminicenantes_63_16_curated
PLM3_60_coex_sep16_scaffold_27_11
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7316..8320)
DNA (1005bp) protein (335aa)
Glycerol-3-phosphate-transporting ATPase Tax=Rhizobium meliloti RepID=F6BN82_SINMB
Sorbitol/mannitol ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEC77482.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
smoK; ATP-binding transport ABC transporter protein
PLM3_60_coex_sep16_scaffold_27_12
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8336..9166)
DNA (831bp) protein (277aa)
Probable sorbitol/mannitol transport inner membrane protein Tax=Labrenzia aggregata IAM 12614 RepID=A0NY12_9RHOB
Mannitol ABC transporter permease {ECO:0000313|EMBL:ERP86353.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
binding-protein-dependent transporters inner membrane component
PLM3_60_coex_sep16_scaffold_27_13
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9173..10039)
DNA (867bp) protein (289aa)
Binding-protein-dependent transport systems inner membrane component Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LVL2_9PROT
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AJD50444.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
PLM3_60_coex_sep16_scaffold_27_14
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10130..11446)
DNA (1317bp) protein (439aa)
sugar ABC transporter substrate-binding protein Tax=Rhizobium meliloti RepID=UPI00035DED99
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDP74866.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
extracellular solute-binding protein
PLM3_60_coex_sep16_scaffold_27_15
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11618..12571)
DNA (954bp) protein (318aa)
Putative transcriptional regulator Tax=Labrenzia aggregata IAM 12614 RepID=A0NY09_9RHOB
Putative transcriptional regulator {ECO:0000313|EMBL:EAV42353.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
transcriptional regulator with sigma factor-related N-terminal domain
PLM3_60_coex_sep16_scaffold_27_16
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12638..13270)
DNA (633bp) protein (211aa)
HAD superfamily hydrolase (EC:3.1.3.-)
HAD family hydrolase Tax=Rhodobacter capsulatus RepID=V8H0N9_RHOCA
HAD superfamily hydrolase {ECO:0000313|EMBL:KFE34909.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
PLM3_60_coex_sep16_scaffold_27_17
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13227..13724)
DNA (498bp) protein (166aa)
Bll1134 protein Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89VB3_BRADU
Uncharacterized protein {ECO:0000313|EMBL:BAR56429.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_27_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13835..14533)
DNA (699bp) protein (233aa)
Putative low-complexity protein Tax=Microvirga sp. WSM3557 RepID=I4YWL1_9RHIZ
Putative low-complexity protein {ECO:0000313|EMBL:EIM28353.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
pentapeptide repeat-containing protein
PLM3_60_coex_sep16_scaffold_27_19
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14555..15817)
DNA (1263bp) protein (421aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI0003693724
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6
2-polyprenyl-6-methoxyphenol 4-hydroxylase {ECO:0000313|EMBL:EKE78550.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
PLM3_60_coex_sep16_scaffold_27_20
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16106..17359
DNA (1254bp) protein (418aa)
putative aminotransferase (EC:2.6.1.-)
N-succinyldiaminopimelate aminotransferase Tax=Oceanibaculum indicum P24 RepID=K2JST6_9PROT
Aminotransferase {ECO:0000313|EMBL:EWY35752.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
PLM3_60_coex_sep16_scaffold_27_21
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17362..19755
DNA (2394bp) protein (798aa)
DNA segregation ATPase FtsK/SpoIIIE Tax=Oceanibaculum indicum P24 RepID=K2K6U8_9PROT
DNA segregation ATPase FtsK/SpoIIIE {ECO:0000313|EMBL:EKE78554.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
DNA segregation ATPase FtsK/SpoIIIE
PLM3_60_coex_sep16_scaffold_27_22
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19759..20427
DNA (669bp) protein (223aa)
Putative outer-membrane lipoprotein carrier protein Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F4R0_9PROT
putative outer-membrane lipoprotein carrier protein
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
PLM3_60_coex_sep16_scaffold_27_23
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20581..21366
DNA (786bp) protein (262aa)
Gamma-glutamyl-gamma-aminobutyrate hydrolase Tax=Azospirillum brasilense Sp245 RepID=G8AGC3_AZOBR
Gamma-glutamyl-gamma-aminobutyrate hydrolase {ECO:0000313|EMBL:KJB93846.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
peptidase C26
PLM3_60_coex_sep16_scaffold_27_24
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21777..22565
DNA (789bp) protein (263aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:CCC96654.1}; EC=3.1.11.2 {ECO:0000313|EMBL:CCC96654.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Exodeoxyribonuclease III Tax=Azospirillum brasilense Sp245 RepID=G8AGB9_AZOBR
exodeoxyribonuclease III
PLM3_60_coex_sep16_scaffold_27_25
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22578..23063)
DNA (486bp) protein (162aa)
Uncharacterized protein Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TGH3_TISMK
Uncharacterized protein {ECO:0000313|EMBL:EWY42372.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_27_26
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23098..23550)
DNA (453bp) protein (151aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI00038244C3
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:EWY42371.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
transcriptional regulator
PLM3_60_coex_sep16_scaffold_27_27
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23572..26289)
DNA (2718bp) protein (906aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI00036E8716
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_60_coex_sep16_scaffold_27_28
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26511..27758
DNA (1248bp) protein (416aa)
Putative glycosyltransferase Tax=Azospirillum brasilense Sp245 RepID=G8AGB4_AZOBR
Membrane protein {ECO:0000313|EMBL:KJB95843.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
putative glycosyltransferase
PLM3_60_coex_sep16_scaffold_27_29
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27832..29112
DNA (1281bp) protein (427aa)
Glucosyltransferase Tax=alpha proteobacterium BAL199 RepID=A8TXL6_9PROT
Glucosyltransferase {ECO:0000313|EMBL:EDP62807.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
wcaL; glucosyltransferase
Displaying items 1-30 of 93 in total

View Taxonomy