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PLM3_60_coex_sep16_scaffold_47

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Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_47_1
Geminocystis sp. NIES-3709, Geminocystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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2..2509
DNA (2508bp) protein (836aa)
Hemolysin-type calcium-binding region Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E11B6C
Alkaline phosphatase {ECO:0000313|EMBL:BAQ65934.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Geminocystis.;" source="Geminocystis sp. NIES-3709.;"
Hemolysin-type calcium-binding protein
PLM3_60_coex_sep16_scaffold_47_2

Not on your lists

comp(3030..3980)
DNA (951bp) protein (317aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Proline iminopeptidase bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
proline iminopeptidase
PLM3_60_coex_sep16_scaffold_47_3
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4085..4858
DNA (774bp) protein (258aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2KI56_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAQ18734.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
PLM3_60_coex_sep16_scaffold_47_4
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4855..6324
DNA (1470bp) protein (490aa)
zinc metalloprotease (EC:3.4.-.-)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI000364813D
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM3_60_coex_sep16_scaffold_47_5
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6321..8156
DNA (1836bp) protein (612aa)
Putative Adenylate cyclase Tax=Azospirillum brasilense Sp245 RepID=G8AF61_AZOBR
Adenylate cyclase {ECO:0000313|EMBL:KJB94901.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
putative Adenylate cyclase
PLM3_60_coex_sep16_scaffold_47_6

Not on your lists

comp(8167..8967)
DNA (801bp) protein (267aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2KI52_9PROT
Uncharacterized protein {ECO:0000313|EMBL:BAP28505.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_47_7

Not on your lists

comp(9049..9558)
DNA (510bp) protein (170aa)
CarD family transcriptional regulator Tax=Fodinicurvata sediminis RepID=UPI0003B5DBA0
CarD family transcriptional regulator {ECO:0000313|EMBL:BAP28486.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transcriptional regulator
PLM3_60_coex_sep16_scaffold_47_8

Not on your lists

comp(9864..10199)
DNA (336bp) protein (112aa)
4Fe-4S ferredoxin Tax=Sphingomonas elodea RepID=UPI0002630D82
4Fe-4S ferredoxin {ECO:0000313|EMBL:BAP28502.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
PLM3_60_coex_sep16_scaffold_47_9
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10398..10787)
DNA (390bp) protein (130aa)
Putative Heat shock protein Tax=Oceanibaculum indicum P24 RepID=K2JH18_9PROT
hslR; ribosome-associated heat shock protein Hsp15
Ribosome-associated heat shock protein Hsp15 {ECO:0000313|EMBL:CCQ75535.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
PLM3_60_coex_sep16_scaffold_47_10
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10795..13323)
DNA (2529bp) protein (843aa)
Putative ATP-dependent DNA/RNA helicase Tax=Azospirillum brasilense Sp245 RepID=G8AF76_AZOBR
DNA helicase {ECO:0000313|EMBL:EWY37340.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
disulfide oxidoreductase
PLM3_60_coex_sep16_scaffold_47_11
unknown

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comp(13417..14247)
DNA (831bp) protein (277aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_47_12
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14415..16286
DNA (1872bp) protein (624aa)
Chaperone protein HtpG Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IUI4_RHOCS
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
heat shock protein 90
PLM3_60_coex_sep16_scaffold_47_13
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16319..17050)
DNA (732bp) protein (244aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8U2U6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP61561.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_47_14
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17233..17604
DNA (372bp) protein (124aa)
Uncharacterized protein Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G2C5_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFV99980.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans H24.;"
PLM3_60_coex_sep16_scaffold_47_15
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(17685..18731)
DNA (1047bp) protein (349aa)
Putative ABC transporter permease protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I886_CALAS
ABC transporter permease
Tax=RBG_16_Chloroflexi_52_11_curated
PLM3_60_coex_sep16_scaffold_47_16
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(18728..19828)
DNA (1101bp) protein (367aa)
Permease component of ABC-type sugar transporter (Fragment) Tax=Rhizobium sp. CF122 RepID=J2J6R7_9RHIZ
transporter
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM3_60_coex_sep16_scaffold_47_17

Not on your lists

comp(19895..21379)
DNA (1485bp) protein (495aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM68366.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative ABC transporter solute-binding protein; K02027 multiple sugar transport system substrate-binding protein bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
putative ABC transporter solute-binding protein
PLM3_60_coex_sep16_scaffold_47_18
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21594..22340
DNA (747bp) protein (249aa)
hypothetical protein Tax=Kaistia granuli RepID=UPI00037AFD1D
GntR family transcriptional regulator {ECO:0000313|EMBL:KKC33976.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
GntR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_47_19
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22337..25039)
DNA (2703bp) protein (901aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
acnA; aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase Tax=Oceanibaculum indicum P24 RepID=K2J679_9PROT
PLM3_60_coex_sep16_scaffold_47_20
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25597..26247
DNA (651bp) protein (217aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
Heme ABC transporter (Heme exporter protein A), ATP-binding protein (Cytochrome c-type biogenesis) Tax=Phaeospirillum molischianum DSM 120 RepID=H8FT58_PHAMO
ccmA; heme ABC transporter (heme exporter protein A), ATP-binding protein (cytochrome c-type biogenesis)
PLM3_60_coex_sep16_scaffold_47_21
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26244..26909
DNA (666bp) protein (222aa)
heme ABC transporter permease Tax=Novispirillum itersonii RepID=UPI00036A6A97
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
ABC-type transport system involved in cytochrome c biogenesis, permease component
PLM3_60_coex_sep16_scaffold_47_22
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27080..27820
DNA (741bp) protein (247aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI000381F79E
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE {ECO:0000313|EMBL:EKV32222.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
cycZ; heme ABC transporter (exporter), permease component
PLM3_60_coex_sep16_scaffold_47_23
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27828..28004
DNA (177bp) protein (59aa)
Heme exporter protein D (Modular protein) Tax=Phaeospirillum molischianum DSM 120 RepID=H8FVX2_PHAMO
Heme exporter protein D (Modular protein) {ECO:0000313|EMBL:CCG42510.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
ccmD heme exporter protein
PLM3_60_coex_sep16_scaffold_47_24
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28001..28477
DNA (477bp) protein (159aa)
Cytochrome c-type biogenesis protein CcmE Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=CCME_ALKEH
CcmE/CycJ protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_60_coex_sep16_scaffold_47_25
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28489..29034
DNA (546bp) protein (182aa)
Cytochrome c biogenesis protein Tax=Oceanibaculum indicum P24 RepID=K2K5K5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KGM30016.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
cytochrome C biogenesis protein CycX
PLM3_60_coex_sep16_scaffold_47_26
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29024..30205
DNA (1182bp) protein (394aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TJ84_9PROT
Cytochrome C biogenesis protein {ECO:0000313|EMBL:KJB95597.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
cycH; cytochrome c-type biogenesis protein CycH
PLM3_60_coex_sep16_scaffold_47_27
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30234..31292
DNA (1059bp) protein (353aa)
Rieske (2Fe-2S) domain-containing protein Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KIT1_MESAW
Rieske (2Fe-2S) iron-sulfur domain protein {ECO:0000313|EMBL:CDX33359.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Rieske (2Fe-2S) domain-containing protein
PLM3_60_coex_sep16_scaffold_47_28
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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31385..32098
DNA (714bp) protein (238aa)
Uncharacterized protein Tax=Polaromonas sp. CF318 RepID=J3D0J9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL82036.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
peptidase M50
PLM3_60_coex_sep16_scaffold_47_29
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32205..32987
DNA (783bp) protein (261aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TJ85_9PROT
ATP-binding protein {ECO:0000313|EMBL:KJB95598.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
occP; octopine permease ATP-binding protein P
PLM3_60_coex_sep16_scaffold_47_30
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33057..34013
DNA (957bp) protein (319aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI00035DAF28
Amino acid ABC transporter, periplasmic amino acid-binding protein {ECO:0000313|EMBL:ESR26738.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
Arginine-binding periplasmic protein 2
Displaying items 1-30 of 60 in total

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