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PLM3_60_coex_sep16_scaffold_48

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Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_48_1
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..381
DNA (381bp) protein (127aa)
Small, thioesterase-like enzyme subunit, putative Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITI3_RHOCS
small, thioesterase-like enzyme subunit
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PLM3_60_coex_sep16_scaffold_48_2
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

389..1198
DNA (810bp) protein (270aa)
Biopolymer transport protein Tax=Oceanibaculum indicum P24 RepID=K2IXE3_9PROT
Biopolymer transport protein {ECO:0000313|EMBL:EKE67317.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
tolQ; TolQ protein
PLM3_60_coex_sep16_scaffold_48_3
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1199..1669
DNA (471bp) protein (157aa)
Biopolymer transport protein Tax=Oceanibaculum indicum P24 RepID=K2IWQ2_9PROT
Biopolymer transport protein {ECO:0000313|EMBL:EKE67318.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
TolR; TolR protein
PLM3_60_coex_sep16_scaffold_48_4
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1685..2650
DNA (966bp) protein (322aa)
Periplasmic protein TonB Tax=Phaeospirillum fulvum MGU-K5 RepID=S9SAX7_PHAFV
Periplasmic protein TonB {ECO:0000313|EMBL:EPY01864.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
tolA; TolA protein
PLM3_60_coex_sep16_scaffold_48_5
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2690..4009
DNA (1320bp) protein (440aa)
Protein TolB Tax=Oceanibaculum indicum P24 RepID=K2IY00_9PROT
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
tolB; periplasmic protein of the Tol-Pal system
PLM3_60_coex_sep16_scaffold_48_6
unknown

Not on your lists

comp(4006..4134)
DNA (129bp) protein (43aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_48_7
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4172..4645
DNA (474bp) protein (158aa)
Outer membrane lipoprotein omp16 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITH8_RHOCS
OmpA/MotB {ECO:0000313|EMBL:KJV10603.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
omp16; outer membrane lipoprotein omp16
PLM3_60_coex_sep16_scaffold_48_8
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4887..5927
DNA (1041bp) protein (347aa)
hypothetical protein Tax=Thalassospira lucentensis RepID=UPI0003B305B6
TPR repeat containing exported protein {ECO:0000313|EMBL:EKV31362.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_48_9

Not on your lists

5995..7383
DNA (1389bp) protein (463aa)
Putative PP-loop superfamily ATPase Tax=uncultured organism RepID=Q1EI29_9ZZZZ
Putative PP-loop superfamily ATPase {ECO:0000313|EMBL:CAK32581.1}; species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ATPase
PLM3_60_coex_sep16_scaffold_48_10
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7489..9432
DNA (1944bp) protein (648aa)
ftsH; ATP-dependent zinc metalloprotease (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
ATP-dependent zinc metalloprotease Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F137_9PROT
PLM3_60_coex_sep16_scaffold_48_11
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9559..9768
DNA (210bp) protein (70aa)
Putative potassium efflux transporter YbaL Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZAS3_9BRAD
putative potassium efflux transporter YbaL
Putative potassium efflux transporter YbaL {ECO:0000313|EMBL:BAM90481.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
PLM3_60_coex_sep16_scaffold_48_12
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9758..10858
DNA (1101bp) protein (367aa)
folP; Dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase Tax=Magnetospirillum sp. SO-1 RepID=M3AA69_9PROT
Dihydropteroate synthase {ECO:0000313|EMBL:EME69648.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
PLM3_60_coex_sep16_scaffold_48_13
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11152..11988)
DNA (837bp) protein (279aa)
Carboxyvinyl-carboxyphosphonate phosphorylmutase, putative Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SM14_METPP
carboxyvinyl-carboxyphosphonate phosphorylmutase
Carboxyvinyl-carboxyphosphonate phosphorylmutase, putative {ECO:0000313|EMBL:ABM96603.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
PLM3_60_coex_sep16_scaffold_48_14
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11994..13748)
DNA (1755bp) protein (585aa)
Putative adenylate cyclase 3 {ECO:0000313|EMBL:CCV15042.1}; EC=4.6.1.1 {ECO:0000313|EMBL:CCV15042.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Putative adenylate cyclase 3 Tax=Mesorhizobium sp. STM 4661 RepID=M5FCU6_9RHIZ
adenylate class-3/4/guanylyl cyclase
PLM3_60_coex_sep16_scaffold_48_15
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14171..15550
DNA (1380bp) protein (460aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=GLMM_RHOCS
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM3_60_coex_sep16_scaffold_48_16
RLO_PLX_64_10, Bacteria

Not on your lists

comp(15564..16724)
DNA (1161bp) protein (387aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00035E3B77
putative pyridoxal phosphate-dependent enzyme
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_60_coex_sep16_scaffold_48_17
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16866..17783
DNA (918bp) protein (306aa)
hypothetical protein Tax=Pandoraea sp. B-6 RepID=UPI00034BBED4
LysR family transcriptional regulator {ECO:0000313|EMBL:EON13791.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
LysR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_48_18
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17932..18714
DNA (783bp) protein (261aa)
Extracellular solute-binding protein Tax=Burkholderia sp. YI23 RepID=G8MJ09_9BURK
extracellular solute-binding protein
Extracellular solute-binding protein {ECO:0000313|EMBL:AET93486.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
PLM3_60_coex_sep16_scaffold_48_19
Marinomonas profundimaris, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18795..19511
DNA (717bp) protein (239aa)
UPI0003D59486 related cluster Tax=unknown RepID=UPI0003D59486
ABC transporter permease {ECO:0000313|EMBL:ETI58292.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas profundimaris.;"
polar amino acid ABC transporter inner membrane subunit
PLM3_60_coex_sep16_scaffold_48_20
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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19508..20248
DNA (741bp) protein (247aa)
ABC transporter permease Tax=Pseudomonas caeni RepID=UPI0003B5AFA3
amino acid ABC transporter permease
Uncharacterized protein {ECO:0000313|EMBL:AFN76353.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri DSM 10701.;"
PLM3_60_coex_sep16_scaffold_48_21
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20245..20646
DNA (402bp) protein (134aa)
TdcF Tax=Kiloniella laminariae RepID=UPI00037AFC93
Uncharacterized protein {ECO:0000313|EMBL:ESQ85086.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
RidA
PLM3_60_coex_sep16_scaffold_48_22
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20650..21288)
DNA (639bp) protein (213aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI0002E9E028
FMN-binding negative transcriptional regulator
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_60_coex_sep16_scaffold_48_23
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21299..22684)
DNA (1386bp) protein (462aa)
Putative transcriptional regulator, GntR family protein Tax=Oceanibaculum indicum P24 RepID=K2JA32_9PROT
Transcriptional regulator {ECO:0000313|EMBL:EWY38938.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
GntR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_48_24
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23023..23829
DNA (807bp) protein (269aa)
Uncharacterized protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZGQ9_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS90464.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
PLM3_60_coex_sep16_scaffold_48_25
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23822..24331
DNA (510bp) protein (170aa)
N-acetyltransferase GCN5 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
N-acetyltransferase GCN5
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
PLM3_60_coex_sep16_scaffold_48_26
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24466..24795
DNA (330bp) protein (110aa)
Uncharacterized protein Tax=Microvirga sp. WSM3557 RepID=I4YYW4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM29156.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
NIPSNAP domain-containing protein
PLM3_60_coex_sep16_scaffold_48_27
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24792..25136
DNA (345bp) protein (115aa)
antibiotic biosynthesis monooxygenase Tax=Fodinicurvata sediminis RepID=UPI0003B50B25
antibiotic biosynthesis monooxygenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_60_coex_sep16_scaffold_48_28
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(25216..25770)
DNA (555bp) protein (185aa)
fasciclin Tax=Comamonas sp. B-9 RepID=UPI00039553A8
beta-Ig-H3/fasciclin
Uncharacterized protein {ECO:0000313|EMBL:EPD33543.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
PLM3_60_coex_sep16_scaffold_48_29
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26029..27180
DNA (1152bp) protein (384aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00019609}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00019609};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase Tax=Rhodospirillum rubrum RepID=G2TEF0_RHORU
PLM3_60_coex_sep16_scaffold_48_30
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27191..28768
DNA (1578bp) protein (526aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITG5_RHOCS
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EWY38931.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Displaying items 1-30 of 66 in total

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