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PLM3_60_coex_sep16_scaffold_63

Search features with annotation key words

Displaying items 1-30 of 133 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_63_1
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(533..781)
DNA (249bp) protein (83aa)
Phospholipase D/Transphosphatidylase Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JCJ5_ANAD2
phospholipase D/transphosphatidylase
Tax=RBG_16_Deltaproteobacteria_71_12_curated
PLM3_60_coex_sep16_scaffold_63_2
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

891..1916
DNA (1026bp) protein (342aa)
Integrase, catalytic region Tax=Magnetococcus sp. (strain MC-1) RepID=A0LBL4_MAGSM
Integrase {ECO:0000313|EMBL:KJC56487.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
integrase catalytic subunit
PLM3_60_coex_sep16_scaffold_63_3
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2240..3505)
DNA (1266bp) protein (422aa)
Long-chain fatty acid transport protein Tax=Lutibaculum baratangense AMV1 RepID=V4TD61_9RHIZ
Long-chain fatty acid transport protein {ECO:0000313|EMBL:ESR24233.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
aromatic hydrocarbon degradation membrane protein
PLM3_60_coex_sep16_scaffold_63_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3762..4778)
DNA (1017bp) protein (339aa)
Integrase, catalytic region Tax=Magnetococcus sp. (strain MC-1) RepID=A0LAQ5_MAGSM
Integrase {ECO:0000313|EMBL:KJC56487.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
integrase catalytic subunit
PLM3_60_coex_sep16_scaffold_63_5
bacterium YEK0313, Bacteria

Not on your lists

comp(4932..5318)
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=A9AS24_BURM1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEJ16004.1}; species="Bacteria.;" source="bacterium YEK0313.;"
PLM3_60_coex_sep16_scaffold_63_6
unknown

Not on your lists

comp(5338..5469)
DNA (132bp) protein (44aa)
hypothetical protein
PLM3_60_coex_sep16_scaffold_63_7
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5715..6047)
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TTQ5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP64181.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_63_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6206..6529
DNA (324bp) protein (108aa)
ArsR family transcriptional regulator Tax=Sphingobium sp. SYK-6 RepID=G2IU87_9SPHN
ArsR family transcriptional regulator
ArsR family transcriptional regulator {ECO:0000313|EMBL:BAK68612.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
PLM3_60_coex_sep16_scaffold_63_9
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6540..6965
DNA (426bp) protein (142aa)
Uncharacterized protein Tax=Methylobacterium RepID=B1ZCL2_METPB
YeeE/YedE family protein {ECO:0000313|EMBL:KJB95278.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_63_10
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6967..7410
DNA (444bp) protein (148aa)
Uncharacterized protein Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF13_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAX22010.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
PLM3_60_coex_sep16_scaffold_63_11
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7441..7713
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Caenispirillum salinarum AK4 RepID=K9GVV8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKV28889.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
membrane protein
PLM3_60_coex_sep16_scaffold_63_12
unknown

Not on your lists

7818..8771
DNA (954bp) protein (318aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_63_13
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(8695..9786)
DNA (1092bp) protein (364aa)
hypothetical protein bin=bin9_gal15 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=CSP1_3_Armatimonadetes
PLM3_60_coex_sep16_scaffold_63_14
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(9896..10285)
DNA (390bp) protein (130aa)
hypothetical protein bin=bin9_gal15 species=unknown genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=CSP1_3_Armatimonadetes
PLM3_60_coex_sep16_scaffold_63_15
Marinomonas sp. MED121, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10413..11303)
DNA (891bp) protein (297aa)
hypothetical protein Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E15CBB
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:EAQ66963.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas sp. MED121.;"
LysR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_63_16
marine gamma proteobacterium HTCC2080, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11439..12521
DNA (1083bp) protein (361aa)
NAD/mycothiol-dependent formaldehyde dehydrogenase (EC:1.1.1.306)
zinc-binding dehydrogenase Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002883F3F
Oxidoreductase, zinc-binding dehydrogenase family protein {ECO:0000313|EMBL:EAW41483.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2080.;"
PLM3_60_coex_sep16_scaffold_63_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12533..13636
DNA (1104bp) protein (368aa)
Mandelate racemase/muconate lactonizing protein Tax=Shinella zoogloeoides DD12 RepID=V5CWN0_9RHIZ
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EYR81284.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mandelate racemase/muconate lactonizing protein
PLM3_60_coex_sep16_scaffold_63_18
unknown

Not on your lists

13633..13740
DNA (108bp) protein (36aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_63_19
Desulfonatronum thiodismutans, Desulfonatronum, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13835..15010
DNA (1176bp) protein (392aa)
hypothetical protein Tax=Xanthobacteraceae RepID=UPI0003818872
Uncharacterized protein {ECO:0000313|EMBL:AIE19686.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfonatronumaceae; Desulfonatronum.;" source="Desulfonatronum thiodismutans.;"
family 1 extracellular solute-binding protein
PLM3_60_coex_sep16_scaffold_63_20
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15088..16179
DNA (1092bp) protein (364aa)
Spermidine/putrescine ABC transporter, ATP-binding component Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z236_AZOL4
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EWY42635.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
potA; Spermidine/putrescine ABC transporter, ATP-binding component
PLM3_60_coex_sep16_scaffold_63_21
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16172..17074
DNA (903bp) protein (301aa)
Binding-protein-dependent transport systems inner membrane component Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKE2_TISMK
potB; binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AFK53230.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM3_60_coex_sep16_scaffold_63_22
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17083..17958
DNA (876bp) protein (292aa)
Polyamine ABC transporter, permease component Tax=Azospirillum brasilense Sp245 RepID=G8AFD3_AZOBR
polyamine ABC transporter, permease component
Polyamine ABC transporter, permease component {ECO:0000313|EMBL:CCC96482.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
PLM3_60_coex_sep16_scaffold_63_23
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17989..18657)
DNA (669bp) protein (223aa)
katA; catalase (EC:1.11.1.6)
Catalase {ECO:0000313|EMBL:ACJ00901.1}; EC=1.11.1.6 {ECO:0000313|EMBL:ACJ00901.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Catalase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IX77_RHOCS
PLM3_60_coex_sep16_scaffold_63_24
unknown

Not on your lists

comp(18608..19432)
DNA (825bp) protein (275aa)
Catalase {ECO:0000313|EMBL:CPR19813.1}; EC=1.11.1.6 {ECO:0000313|EMBL:CPR19813.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Catalase Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TFF2_PHAFV
catalase
PLM3_60_coex_sep16_scaffold_63_25
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(19555..21483)
DNA (1929bp) protein (643aa)
UPI0003CFD726 related cluster Tax=unknown RepID=UPI0003CFD726
putative proteinase
Tax=CG_Anaero_04
PLM3_60_coex_sep16_scaffold_63_26
RIFOXYD12_FULL_Rhodospirillales_60_8_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21669..22373)
DNA (705bp) protein (235aa)
Uncharacterized protein Tax=Methylosinus trichosporium OB3b RepID=D5QKT2_METTR
exported protein of unknown function
Tax=RIFOXYD12_FULL_Rhodospirillales_60_8_curated
PLM3_60_coex_sep16_scaffold_63_27
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22453..24864)
DNA (2412bp) protein (804aa)
FAD dependent oxidoreductase Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y332_9RHIZ
Putative dimethylglycine dehydrogenase {ECO:0000313|EMBL:CDX41714.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
FAD dependent oxidoreductase
PLM3_60_coex_sep16_scaffold_63_28
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25001..25672
DNA (672bp) protein (224aa)
UPI0003CEDA24 related cluster Tax=unknown RepID=UPI0003CEDA24
TetR family transcriptional regulator {ECO:0000313|EMBL:ESY87368.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
TetR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_63_29
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25979..26698
DNA (720bp) protein (240aa)
Uncharacterized protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZF62_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS90075.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
PLM3_60_coex_sep16_scaffold_63_30
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26703..28835
DNA (2133bp) protein (711aa)
gcy; guanylate cyclase (EC:4.6.1.2)
Guanylate cyclase {ECO:0000313|EMBL:BAI75699.1}; EC=4.6.1.2 {ECO:0000313|EMBL:BAI75699.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
Guanylate cyclase Tax=Azospirillum sp. (strain B510) RepID=D3P4X0_AZOS1
Displaying items 1-30 of 133 in total

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