ggKbase home page

PLM3_60_coex_sep16_scaffold_103

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_103_1
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..870)
DNA (870bp) protein (290aa)
Hypothetical hydrolase/peptidase Tax=Rhizobium loti (strain MAFF303099) RepID=Q982L4_RHILO
hydrolase/peptidase
Hypothetical hydrolase/peptidase {ECO:0000313|EMBL:BAB54442.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
PLM3_60_coex_sep16_scaffold_103_2
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1081..2448
DNA (1368bp) protein (456aa)
Uncharacterized protein Tax=Bradyrhizobium sp. ORS 285 RepID=H0RRX9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD84706.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_103_3
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2564..3319
DNA (756bp) protein (252aa)
Transcription regulator Tax=Rhizobium grahamii CCGE 502 RepID=S3HV25_9RHIZ
HTH-type transcriptional regulator kipR Kip operon repressor protein
HTH-type transcriptional regulator kipR Kip operon repressor protein {ECO:0000313|EMBL:CDM61332.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
PLM3_60_coex_sep16_scaffold_103_4
Celeribacter baekdonensis, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3342..4718
DNA (1377bp) protein (459aa)
hypothetical protein Tax=Roseomonas sp. B5 RepID=UPI0002E6739F
D-amino acid oxidase {ECO:0000313|EMBL:EKE71961.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter baekdonensis B30.;"
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG Glucose-inhibited division protein A
PLM3_60_coex_sep16_scaffold_103_5
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4938..6158)
DNA (1221bp) protein (407aa)
Cytochrome P450 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YE92_9RHIZ
Cytochrome P450 {ECO:0000313|EMBL:EHH10033.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
cytochrome P450
PLM3_60_coex_sep16_scaffold_103_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6220..7674)
DNA (1455bp) protein (485aa)
Amino acid permease Tax=Rhizobium sp. Pop5 RepID=K0WHS5_9RHIZ
Amino acid permease {ECO:0000313|EMBL:KDP76565.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
amino acid permease-associated region
PLM3_60_coex_sep16_scaffold_103_7
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8007..8606
DNA (600bp) protein (200aa)
transcriptional regulator Tax=Nocardiopsis lucentensis RepID=UPI00034DF3D6
hypothetical protein
Putative transcriptional regulator {ECO:0000313|EMBL:ELS58264.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes Tue57.;"
PLM3_60_coex_sep16_scaffold_103_8
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8684..10147
DNA (1464bp) protein (488aa)
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase {ECO:0000313|EMBL:CEL20746.1}; EC=1.2.1.60 {ECO:0000313|EMBL:CEL20746.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
betaine-aldehyde dehydrogenase (EC:1.2.1.8)
Betaine-aldehyde dehydrogenase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BFM3_STRRD
PLM3_60_coex_sep16_scaffold_103_9
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10140..11036
DNA (897bp) protein (299aa)
Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LTW3_ACIC1
putative 3,4-dihydroxyphenylacetate 2,3-dioxygenase
Putative 3,4-dihydroxyphenylacetate 2,3-dioxygenase {ECO:0000313|EMBL:AHH95451.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM3_60_coex_sep16_scaffold_103_10
Kitasatospora griseola, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11054..11908
DNA (855bp) protein (285aa)
5-carboxymethyl-2-hydroxymuconate isomerase Tax=Streptomyces rapamycinicus RepID=UPI0003830C65
Kitasatospora griseola strain MF730-N6 RKJC_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ64787.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora griseola (Streptomyces griseolosporeus).;"
5-carboxymethyl-2-hydroxymuconate isomerase
PLM3_60_coex_sep16_scaffold_103_11
Streptomyces sviceus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11931..12737
DNA (807bp) protein (269aa)
Acetoacetate decarboxylase Tax=Streptomyces sviceus ATCC 29083 RepID=B5HRZ4_9ACTO
Acetoacetate decarboxylase {ECO:0000313|EMBL:EDY55599.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sviceus ATCC 29083.;"
acetoacetate decarboxylase
PLM3_60_coex_sep16_scaffold_103_12
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

12769..14187
DNA (1419bp) protein (473aa)
aromatic-L-amino-acid decarboxylase (EC:4.1.1.28)
Aromatic-L-amino-acid decarboxylase {ECO:0000313|EMBL:ABJ82176.1}; EC=4.1.1.28 {ECO:0000313|EMBL:ABJ82176.1};; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Aromatic-L-amino-acid decarboxylase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029V0_SOLUE
PLM3_60_coex_sep16_scaffold_103_13
Roseobacter sp. SK209-2-6, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14203..15465
DNA (1263bp) protein (421aa)
Cytochrome P450 family protein Tax=Roseobacter sp. SK209-2-6 RepID=A4F1N7_9RHOB
Cytochrome P450 family protein {ECO:0000313|EMBL:EBA14235.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. SK209-2-6.;"
cytochrome P450 family protein
PLM3_60_coex_sep16_scaffold_103_14
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15490..16779
DNA (1290bp) protein (430aa)
Glutamine synthetase family protein Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JTD4_9RHOB
Glutamine synthetase family protein {ECO:0000313|EMBL:EBA03153.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium HTCC2150.;"
glutamine synthetase
PLM3_60_coex_sep16_scaffold_103_15
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16793..17110
DNA (318bp) protein (106aa)
Iron-sulfur cluster-binding protein Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LVD6_RUEPO
iron-sulfur cluster-binding protein
Iron-sulfur cluster-binding protein {ECO:0000313|EMBL:AAV94071.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
PLM3_60_coex_sep16_scaffold_103_16
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17140..18360
DNA (1221bp) protein (407aa)
ferredoxin reductase (EC:1.18.1.2)
Rhodocoxin reductase Tax=Ahrensia sp. R2A130 RepID=E0MJV4_9RHOB
Rhodocoxin reductase {ECO:0000313|EMBL:EFL90104.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
PLM3_60_coex_sep16_scaffold_103_17
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18414..18875)
DNA (462bp) protein (154aa)
Uncharacterized protein Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HRA3_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF87150.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
PLM3_60_coex_sep16_scaffold_103_trna_1
unknown

Not on your lists

comp(18906..18997)
DNA (92bp)
transferRNA SeC(p)
PLM3_60_coex_sep16_scaffold_103_18
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19024..20955)
DNA (1932bp) protein (644aa)
Selenocysteine-specific translation elongation factor Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DW92_THIND
Translation elongation factor {ECO:0000313|EMBL:GAO35622.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
selB_[H]; Selenocysteine-specific translation elongation factor
PLM3_60_coex_sep16_scaffold_103_19
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20952..21755)
DNA (804bp) protein (268aa)
Sel1-like repeat protein Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HRA6_AZOC5
Sel1 repeat-containing protein
Sel1-like repeat protein {ECO:0000313|EMBL:BAF87152.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
PLM3_60_coex_sep16_scaffold_103_20
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21759..23147)
DNA (1389bp) protein (463aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
selA_[H]; L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DUE6_THIND
PLM3_60_coex_sep16_scaffold_103_21
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23197..24120)
DNA (924bp) protein (308aa)
Protein FdhE homolog Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JQU3_BURP8
Protein FdhE homolog {ECO:0000256|HAMAP-Rule:MF_00611}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
formate dehydrogenase accessory protein FdhE
PLM3_60_coex_sep16_scaffold_103_22
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24117..24755)
DNA (639bp) protein (213aa)
Formate dehydrogenase, gamma subunit Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J1C8_POLGS
formate dehydrogenase subunit gamma
Formate dehydrogenase, gamma subunit {ECO:0000313|EMBL:ADZ69710.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
PLM3_60_coex_sep16_scaffold_103_23
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24755..25654)
DNA (900bp) protein (300aa)
fdxH; formate dehydrogenase subunit beta (EC:1.2.1.2)
Formate dehydrogenase, beta subunit {ECO:0000313|EMBL:ADP13680.1}; EC=1.2.1.2 {ECO:0000313|EMBL:ADP13680.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
Formate dehydrogenase, beta subunit Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HT54_ACHXA
PLM3_60_coex_sep16_scaffold_103_24
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25666..28101)
DNA (2436bp) protein (812aa)
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EEQ93004.1}; EC=2.5.1.2 {ECO:0000313|EMBL:EEQ93004.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
Formate dehydrogenase, alpha subunit Tax=Ochrobactrum anthropi RepID=A6X2W7_OCHA4
formate dehydrogenase subunit alpha
PLM3_60_coex_sep16_scaffold_103_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28150..28746)
DNA (597bp) protein (199aa)
sulfate ABC transporter substrate-binding protein Tax=Thiobacillus thioparus RepID=UPI00037384C5
sulfate ABC transporter substrate-binding protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
PLM3_60_coex_sep16_scaffold_103_26
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29009..31246
DNA (2238bp) protein (746aa)
NADH dehydrogenase-like protein / Selenide,water dikinase (EC:2.7.9.3)
NADH dehydrogenase-like protein / Selenide,water dikinase {ECO:0000313|EMBL:AGA34057.1}; EC=2.7.9.3 {ECO:0000313|EMBL:AGA34057.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
NADH dehydrogenase-like protein / Selenide,water dikinase Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DYH2_THIND
PLM3_60_coex_sep16_scaffold_103_27
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31235..32101)
DNA (867bp) protein (289aa)
hypothetical protein Tax=Leucothrix mucor RepID=UPI0003B56E65
Putative ABC-type phosphate/phosphonate transport system, periplasmic component {ECO:0000313|EMBL:EDP65085.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_103_28
Synechococcus sp. PCC 6312, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(32244..33449)
DNA (1206bp) protein (402aa)
RHS repeat-associated core domain protein Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RWK0_SYNP3
RHS repeat-associated core domain-containing protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:AFY61916.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain ATCC 27167 / PCC 6312).;"
PLM3_60_coex_sep16_scaffold_103_29
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33663..34088)
DNA (426bp) protein (142aa)
Uncharacterized protein Tax=Nitrococcus mobilis Nb-231 RepID=A4BQQ0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR21900.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
hypothetical protein
Displaying items 1-30 of 52 in total

View Taxonomy