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PLM3_60_coex_sep16_scaffold_152

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_152_1
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..464)
DNA (462bp) protein (154aa)
spermidine/putrescine ABC transporter permease Tax=Xanthobacteraceae RepID=UPI00036D661D
spermidine/putrescine ABC transporter permease
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:AJY47738.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
PLM3_60_coex_sep16_scaffold_152_2
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(470..1333)
DNA (864bp) protein (288aa)
Binding-protein dependent transport system inner membrane protein Tax=Rhodospirillum rubrum RepID=G2T9Y2_RHORU
binding-protein dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABC23808.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
PLM3_60_coex_sep16_scaffold_152_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1340..2404)
DNA (1065bp) protein (355aa)
spermidine/putrescine ABC transporter ATPase Tax=Xanthobacteraceae RepID=UPI0003650ED5
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADH91334.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
PLM3_60_coex_sep16_scaffold_152_4
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2530..3708)
DNA (1179bp) protein (393aa)
Spermidine/putrescine-binding protein PotD Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0L4_STAND
spermidine/putrescine ABC transporter substrate-binding protein
Spermidine/putrescine ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJY47735.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
PLM3_60_coex_sep16_scaffold_152_5
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3985..4989
DNA (1005bp) protein (335aa)
Aminoglycoside phosphotransferase Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y2I5_THEBD
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:ETK32674.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
aminoglycoside phosphotransferase
PLM3_60_coex_sep16_scaffold_152_6
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5034..5819
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR Tax=Methylocystis sp. (strain SC2) RepID=J7Q3C5_METSZ
short-chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CCJ05534.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
PLM3_60_coex_sep16_scaffold_152_7
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5856..7145
DNA (1290bp) protein (430aa)
Aminotransferase class-III {ECO:0000313|EMBL:AIY20126.2}; EC=2.6.1.40 {ECO:0000313|EMBL:AIY20126.2};; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
Aminotransferase, class III Tax=Rhodococcus erythropolis RepID=C3JQC8_RHOER
ornithine--oxo-acid aminotransferase
PLM3_60_coex_sep16_scaffold_152_8
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7165..8724
DNA (1560bp) protein (520aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:AIY18881.1}; EC=1.1.1.1 {ECO:0000313|EMBL:AIY18881.1};; EC=1.2.1.10 {ECO:0000313|EMBL:AIY18881.1};; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI000370AB23
aldehyde dehydrogenase
PLM3_60_coex_sep16_scaffold_152_9
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8742..9347
DNA (606bp) protein (202aa)
microcompartment protein Tax=Streptomyces scabrisporus RepID=UPI000374385B
hypothetical protein
Microcompartments protein {ECO:0000313|EMBL:CKG89612.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis.;"
PLM3_60_coex_sep16_scaffold_152_10
Rhodococcus erythropolis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9344..9895
DNA (552bp) protein (184aa)
Putative uncharacterized protein Tax=Mycobacterium sp. (strain JLS) RepID=A3PSX0_MYCSJ
Uncharacterized protein {ECO:0000313|EMBL:KIM17893.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus erythropolis (Arthrobacter picolinophilus).;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_152_11
Mycobacterium sp. KMS, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9898..10182
DNA (285bp) protein (95aa)
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Tax=Mycobacterium RepID=A1U9B3_MYCSK
ethanolamine utilization protein EutN
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml {ECO:0000313|EMBL:ABL89421.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain KMS).;"
PLM3_60_coex_sep16_scaffold_152_12
Rhodococcus jostii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10225..10503
DNA (279bp) protein (93aa)
Uncharacterized protein Tax=Rhodococcus sp. (strain RHA1) RepID=Q0RVS3_RHOSR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABH00613.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus jostii (strain RHA1).;"
PLM3_60_coex_sep16_scaffold_152_13
Mycobacterium chubuense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10562..11191
DNA (630bp) protein (210aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI0003665437
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM19587.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium chubuense (strain NBB4).;"
PLM3_60_coex_sep16_scaffold_152_14
Tatumella morbirosei, Tatumella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11195..12256)
DNA (1062bp) protein (354aa)
Transcriptional regulator, AraC family Tax=Pseudomonas putida (strain GB-1) RepID=B0KIB9_PSEPG
AraC family transcriptional regulator {ECO:0000313|EMBL:KGD75150.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Tatumella.;" source="Tatumella morbirosei.;"
AraC family transcriptional regulator
PLM3_60_coex_sep16_scaffold_152_15
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12423..13571)
DNA (1149bp) protein (383aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Dual-specificity RNA methyltransferase RlmN Tax=Azospirillum sp. (strain B510) RepID=D3NQY0_AZOS1
radical SAM enzyme
PLM3_60_coex_sep16_scaffold_152_16
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13674..14189)
DNA (516bp) protein (172aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2K302_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE77234.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_152_17
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14315..14860)
DNA (546bp) protein (182aa)
RNA methyltransferase, TrmH family, putative Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IUD3_RHOCS
RNA methyltransferase {ECO:0000313|EMBL:KJB93831.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
RNA methyltransferase, TrmH family
PLM3_60_coex_sep16_scaffold_152_18
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14953..16002
DNA (1050bp) protein (350aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI00036C1EB6
Asparaginase {ECO:0000313|EMBL:KJB93832.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
putative L-asparaginase II
PLM3_60_coex_sep16_scaffold_152_19
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16022..17005
DNA (984bp) protein (328aa)
NADPH:quinone reductase Tax=Magnetospirillum sp. SO-1 RepID=M2ZAT2_9PROT
NADPH:quinone oxidoreductase {ECO:0000313|EMBL:KJB93833.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
NADPH:quinone reductase and related Zn-dependent oxidoreductase
PLM3_60_coex_sep16_scaffold_152_20
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17002..18249
DNA (1248bp) protein (416aa)
Putative methyltransferase Tax=Azospirillum brasilense Sp245 RepID=G8AF39_AZOBR
Methyltransferase {ECO:0000313|EMBL:EWY39152.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
putative methyltransferase
PLM3_60_coex_sep16_scaffold_152_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18368..18958
DNA (591bp) protein (197aa)
Uncharacterized protein Tax=Afipia clevelandensis ATCC 49720 RepID=K8NZG3_9BRAD
Phospholipid N-methyltransferase {ECO:0000313|EMBL:KFC70885.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ribosomal RNA adenine methylase transferase
PLM3_60_coex_sep16_scaffold_152_22
unknown

Not on your lists

comp(18955..19071)
DNA (117bp) protein (39aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_152_23
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19091..19333)
DNA (243bp) protein (81aa)
hypothetical protein Tax=Fodinicurvata sediminis RepID=UPI0003B309C1
Uncharacterized protein {ECO:0000313|EMBL:EWY41882.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_152_24
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19492..20427
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family protein Tax=alpha proteobacterium BAL199 RepID=A8TN53_9PROT
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:EDP65518.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
gcvA; transcriptional regulator
PLM3_60_coex_sep16_scaffold_152_25
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(20424..21611)
DNA (1188bp) protein (396aa)
Aspartate aminotransferase Tax=Oceanibaculum indicum P24 RepID=K2IHD9_9PROT
aminotransferase, classes I and II
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3_60_coex_sep16_scaffold_152_26
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21644..22573)
DNA (930bp) protein (310aa)
transporter Tax=Thalassospira lucentensis RepID=UPI0003B2E9B3
Membrane protein {ECO:0000313|EMBL:AKH19166.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_152_27
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22702..23304)
DNA (603bp) protein (201aa)
Predicted protein tyrosine phosphatase Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SHQ7_HAHCH
protein tyrosine phosphatase
Uncharacterized protein {ECO:0000313|EMBL:ABC29817.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (strain KCTC 2396).;"
PLM3_60_coex_sep16_scaffold_152_28
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23301..24479)
DNA (1179bp) protein (393aa)
Aminotransferase, class I and II Tax=gamma proteobacterium NOR5-3 RepID=B8KHA9_9GAMM
Aspartate aminotransferase {ECO:0000313|EMBL:KGM33684.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
aspartate aminotransferase
PLM3_60_coex_sep16_scaffold_152_29

Not on your lists

comp(24589..25374)
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2K6W1_9PROT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49460.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative ectoine hydroxylase EctD
PLM3_60_coex_sep16_scaffold_152_30
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25471..25920)
DNA (450bp) protein (150aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI000361B8FC
Uncharacterized protein {ECO:0000313|EMBL:KJB94377.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
Displaying items 1-30 of 97 in total

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