ggKbase home page

PLM3_60_coex_sep16_scaffold_166

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_166_1
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..543
DNA (543bp) protein (181aa)
Putative methyl-accepting chemotaxis protein Tax=Phaeospirillum fulvum MGU-K5 RepID=S9SE80_PHAFV
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EPY02378.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
methyl-accepting chemotaxis sensory transducer
PLM3_60_coex_sep16_scaffold_166_2
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

727..2547
DNA (1821bp) protein (607aa)
Methyl-accepting chemotaxis protein Tax=Azospirillum brasilense Sp245 RepID=G8AEZ4_AZOBR
mcp2; methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CCC98967.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
PLM3_60_coex_sep16_scaffold_166_3
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2695..3663
DNA (969bp) protein (323aa)
OmpA/MotB Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SRL6_NITWN
OmpA/MotB protein
OmpA/MotB {ECO:0000313|EMBL:ABA05075.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
PLM3_60_coex_sep16_scaffold_166_4
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(3685..4149)
DNA (465bp) protein (155aa)
Uncharacterized protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MJB1_CORCM
hypothetical protein
Tax=CG_Anaero_03
PLM3_60_coex_sep16_scaffold_166_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4174..6576)
DNA (2403bp) protein (801aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
transketolase Tax=Fodinicurvata sediminis RepID=UPI0003B57E2B
pyruvate dehydrogenase
PLM3_60_coex_sep16_scaffold_166_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6813..8177)
DNA (1365bp) protein (455aa)
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase Tax=Brevibacillus borstelensis AK1 RepID=M8ECZ1_9BACL
Serine hydroxymethyltransferase {ECO:0000313|EMBL:KGM31217.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
PLM3_60_coex_sep16_scaffold_166_7
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8313..8825
DNA (513bp) protein (171aa)
AsnC family transcriptional regulator Tax=Fodinicurvata sediminis RepID=UPI0003B51164
Uncharacterized protein {ECO:0000313|EMBL:KGM31218.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
AsnC family transcriptional regulator
PLM3_60_coex_sep16_scaffold_166_8
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8843..9550
DNA (708bp) protein (236aa)
Pseudouridine synthase Tax=Azospirillum sp. (strain B510) RepID=D3P0W8_AZOS1
rluD; ribosomal large subunit pseudouridine synthase D
Ribosomal large subunit pseudouridine synthase D {ECO:0000313|EMBL:BAI74297.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM3_60_coex_sep16_scaffold_166_9
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9636..10589
DNA (954bp) protein (318aa)
Agmatinase {ECO:0000313|EMBL:EEB78979.1}; EC=3.5.3.11 {ECO:0000313|EMBL:EEB78979.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
Agmatinase Tax=marine gamma proteobacterium HTCC2148 RepID=B7RWS3_9GAMM
agmatinase
PLM3_60_coex_sep16_scaffold_166_10
Mesorhizobium sp. LNJC394B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10758..11447)
DNA (690bp) protein (230aa)
Aldolase Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G7B5_9RHIZ
Aldolase {ECO:0000313|EMBL:ESY24838.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
aldolase, putative
PLM3_60_coex_sep16_scaffold_166_11
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11444..12619)
DNA (1176bp) protein (392aa)
UPI0003CE6988 related cluster Tax=unknown RepID=UPI0003CE6988
Uncharacterized protein {ECO:0000313|EMBL:ESY76668.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
FMN-dependent alpha-hydroxy acid dehydrogenase
PLM3_60_coex_sep16_scaffold_166_12
RLO_PLX_64_10, Bacteria

Not on your lists

comp(12622..13485)
DNA (864bp) protein (288aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037AF7D6
amidohydrolase 2
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_60_coex_sep16_scaffold_166_13
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13835..14683)
DNA (849bp) protein (283aa)
methyltransferase (EC:2.1.1.-)
Methyltransferase Tax=Achromobacter piechaudii HLE RepID=J4QWS4_9BURK
Methyltransferase {ECO:0000313|EMBL:EJO32755.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
PLM3_60_coex_sep16_scaffold_166_14
unknown

Not on your lists

15000..15359
DNA (360bp) protein (120aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_166_15
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15493..17535
DNA (2043bp) protein (681aa)
Hydantoin utilization protein Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3J3_AGRVS
hyuA; hydantoin utilization protein
Hydantoin utilization protein {ECO:0000313|EMBL:ACM39441.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
PLM3_60_coex_sep16_scaffold_166_16
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17532..19466
DNA (1935bp) protein (645aa)
Hydantoin utilization protein Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3J4_AGRVS
hyuB; hydantoin utilization protein
Hydantoin utilization protein {ECO:0000313|EMBL:ACM39442.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
PLM3_60_coex_sep16_scaffold_166_17

Not on your lists

19812..20372
DNA (561bp) protein (187aa)
OsmC-like protein Tax=uncultured bacterium F42-01 RepID=I3VIK5_9BACT
OsmC-like protein {ECO:0000313|EMBL:AFK79211.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium F42-01.;"
OsmC family protein
PLM3_60_coex_sep16_scaffold_166_18
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20457..21653
DNA (1197bp) protein (399aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y7J3_9RHIZ
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EHH12315.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
pyridine nucleotide-disulfide oxidoreductase
PLM3_60_coex_sep16_scaffold_166_19
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22219..22983)
DNA (765bp) protein (255aa)
3-ketoacyl-ACP reductase Tax=Rhizobium leguminosarum RepID=UPI00036BE78F
short chain dehydrogenase family protein
Short chain dehydrogenase family protein {ECO:0000313|EMBL:AJZ63138.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
PLM3_60_coex_sep16_scaffold_166_20
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23367..24770
DNA (1404bp) protein (468aa)
cysG; siroheme synthase (EC:1.3.1.76 2.1.1.107 4.99.1.4)
Siroheme synthase {ECO:0000313|EMBL:ACI99564.1}; EC=1.3.1.76 {ECO:0000313|EMBL:ACI99564.1};; EC=2.1.1.107 {ECO:0000313|EMBL:ACI99564.1};; EC=4.99.1.4 {ECO:0000313|EMBL:ACI99564.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
hypothetical protein Tax=Kiloniella laminariae RepID=UPI00037D3BEF
PLM3_60_coex_sep16_scaffold_166_21
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24785..25093
DNA (309bp) protein (103aa)
Uncharacterized protein Tax=Thalassospira profundimaris WP0211 RepID=K2LDF9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKF08081.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_166_22
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25104..26759
DNA (1656bp) protein (552aa)
sulfite reductase Tax=Fodinicurvata sediminis RepID=UPI0003B5C6C5
Sulfite reductase [NADPH] hemoprotein beta-component {ECO:0000313|EMBL:EDP62902.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
sulfite reductase
PLM3_60_coex_sep16_scaffold_166_23
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26746..27348
DNA (603bp) protein (201aa)
Uncharacterised conserved protein UCP030820 Tax=alpha proteobacterium BAL199 RepID=A8TWW4_9PROT
Uncharacterised conserved protein UCP030820 {ECO:0000313|EMBL:EDP62901.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_166_24
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27382..28119
DNA (738bp) protein (246aa)
Phosphoadenosine phosphosulfate reductase (EC:1.8.4.8)
Phosphoadenosine phosphosulfate reductase Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BUS4_GRABC
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PLM3_60_coex_sep16_scaffold_166_25
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28321..29532
DNA (1212bp) protein (404aa)
O-acetylhomoserine sulfhydrylase / O-succinylhomoserine sulfhydrylase {ECO:0000313|EMBL:CDO60127.1}; EC=2.5.1.48 {ECO:0000313|EMBL:CDO60127.1};; EC=2.5.1.49 {ECO:0000313|EMBL:CDO60127.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
O-succinylhomoserine sulfhydrylase Tax=Methyloferula stellata RepID=UPI000360FB27
metZ; O-succinylhomoserine sulfhydrylase
PLM3_60_coex_sep16_scaffold_166_26
unknown

Not on your lists

29624..29929
DNA (306bp) protein (102aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_166_27
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30177..32138
DNA (1962bp) protein (654aa)
Uncharacterized protein Tax=Thalassospira profundimaris WP0211 RepID=K2KM57_9PROT
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:KJB96761.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_166_28
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(32201..33151)
DNA (951bp) protein (317aa)
High-affinity nickel-transporter Tax=Oceanibaculum indicum P24 RepID=K2JTD0_9PROT
high-affinity nickel-transporter
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM3_60_coex_sep16_scaffold_166_29
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(33148..33735)
DNA (588bp) protein (196aa)
ABC transporter periplasmic protein Tax=Thalassospira profundimaris WP0211 RepID=K2M2E2_9PROT
ABC transporter
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM3_60_coex_sep16_scaffold_166_30
unknown

Not on your lists

33933..34223
DNA (291bp) protein (97aa)

This feature has no annotations

Displaying items 1-30 of 35 in total

View Taxonomy