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PLM3_60_coex_sep16_scaffold_275

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_275_1
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..138)
DNA (138bp) protein (46aa)
Integrase family protein Tax=Methylobacterium extorquens DSM 13060 RepID=H1KJN6_METEX
Integrase family protein {ECO:0000313|EMBL:EHP92281.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
integrase family protein
PLM3_60_coex_sep16_scaffold_275_2
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

219..845
DNA (627bp) protein (209aa)
Large-conductance mechanosensitive channel Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=MSCL_METSB
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
mscL; large-conductance mechanosensitive channel
PLM3_60_coex_sep16_scaffold_275_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1075..2982
DNA (1908bp) protein (636aa)
Sporulation protein Tax=Sphingobium lactosutens DS20 RepID=T0HJ49_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_60_coex_sep16_scaffold_275_4
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3079..3852)
DNA (774bp) protein (258aa)
Short-chain dehydrogenase/reductase SDR Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M654_METRJ
Short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AIQ87818.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
PLM3_60_coex_sep16_scaffold_275_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3862..5502)
DNA (1641bp) protein (547aa)
Acyl-CoA synthetase bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA synthetase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_275_6
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5614..6273
DNA (660bp) protein (220aa)
Polyketide biosynthesis dithiol-disulfide isomerase Tax=Oceanibaculum indicum P24 RepID=K2KJZ2_9PROT
Polyketide biosynthesis dithiol-disulfide isomerase {ECO:0000313|EMBL:EKE77650.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
polyketide biosynthesis dithiol-disulfide isomerase
PLM3_60_coex_sep16_scaffold_275_7
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6289..9762)
DNA (3474bp) protein (1158aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Transcription-repair-coupling factor Tax=Oceanibaculum indicum P24 RepID=K2JK31_9PROT
transcription-repair coupling factor
PLM3_60_coex_sep16_scaffold_275_8
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9759..10040)
DNA (282bp) protein (94aa)
Uncharacterized protein Tax=Azospirillum sp. (strain B510) RepID=D3NTY0_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI71859.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM3_60_coex_sep16_scaffold_275_9
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10110..12191
DNA (2082bp) protein (694aa)
ATP-dependent DNA helicase RecG Tax=Magnetospirillum sp. SO-1 RepID=M2Z904_9PROT
ATP-dependent DNA helicase RecG
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EME70840.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
PLM3_60_coex_sep16_scaffold_275_10
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12188..12931)
DNA (744bp) protein (248aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TKX8_9PROT
Membrane protein {ECO:0000313|EMBL:KJS42673.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
Conserved protein of unknown function
PLM3_60_coex_sep16_scaffold_275_11
unknown

Not on your lists

comp(13145..13672)
DNA (528bp) protein (176aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_275_12
unknown

Not on your lists

comp(13920..14408)
DNA (489bp) protein (163aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_275_13
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(14433..14687)
DNA (255bp) protein (85aa)
Transglycosylase-associated protein bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM3_60_coex_sep16_scaffold_275_14
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14774..16576)
DNA (1803bp) protein (601aa)
Uncharacterized protein Tax=Azospirillum brasilense Sp245 RepID=G8AJ41_AZOBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJB92963.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
PLM3_60_coex_sep16_scaffold_275_15
unknown

Not on your lists

16920..17483
DNA (564bp) protein (188aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_275_16
unknown

Not on your lists

18114..18329
DNA (216bp) protein (72aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_275_17
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18709..20940
DNA (2232bp) protein (744aa)
PAS/PAC domain protein Tax=Cystobacter fuscus DSM 2262 RepID=S9PJ99_9DELT
BaeS protein {ECO:0000313|EMBL:BAQ47628.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
Multi-sensor hybrid histidine kinase
PLM3_60_coex_sep16_scaffold_275_18
unknown

Not on your lists

comp(20992..21570)
DNA (579bp) protein (193aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_275_19
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22101..22364
DNA (264bp) protein (88aa)
Uncharacterized protein Tax=Lutibaculum baratangense AMV1 RepID=V4RIY3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESR26046.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_275_20
unknown

Not on your lists

comp(22884..22991)
DNA (108bp) protein (36aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_275_21
unknown

Not on your lists

comp(23350..23523)
DNA (174bp) protein (58aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_275_22
unknown

Not on your lists

23669..23830
DNA (162bp) protein (54aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_275_23
unknown

Not on your lists

23864..24055
DNA (192bp) protein (64aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_275_trna_1
unknown

Not on your lists

comp(24169..24240)
DNA (72bp)
transferRNA Lys
PLM3_60_coex_sep16_scaffold_275_24
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24448..25005)
DNA (558bp) protein (186aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
Phosphopantetheine adenylyltransferase Tax=Azospirillum brasilense Sp245 RepID=G8AQN9_AZOBR
phosphopantetheine adenylyltransferase
PLM3_60_coex_sep16_scaffold_275_25
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(24998..27787)
DNA (2790bp) protein (930aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897, ECO:0000313|EMBL:KJB93524.1}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
DNA gyrase subunit A Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z4U7_AZOL4
gyrA; DNA gyrase subunit A
PLM3_60_coex_sep16_scaffold_275_26
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28035..29159)
DNA (1125bp) protein (375aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI00031A4E97
potD; spermidine/putrescine ABC transporter
Tax=BJP_IG2158_Rhodobacterales_69_12
PLM3_60_coex_sep16_scaffold_275_27
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29156..29650)
DNA (495bp) protein (165aa)
Single-stranded DNA-binding protein Tax=Oceanibaculum indicum P24 RepID=K2JQQ4_9PROT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
single-strand DNA binding protein
PLM3_60_coex_sep16_scaffold_275_28
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29851..32754
DNA (2904bp) protein (968aa)
UvrABC system protein A Tax=Oceanibaculum indicum P24 RepID=K2K3W0_9PROT
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
uvrA; excinuclease ABC, subunit A
PLM3_60_coex_sep16_scaffold_275_29
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

32938..33237
DNA (300bp) protein (100aa)
Predicted regulator of plasmid copy number Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKP2_9BACT
hypothetical protein
Predicted regulator of plasmid copy number {ECO:0000313|EMBL:CBE67689.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Displaying items 1-30 of 57 in total

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