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PLM3_60_coex_sep16_scaffold_301

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_301_1
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(31..897)
DNA (867bp) protein (289aa)
Transposase Tax=Bradyrhizobium sp. WSM1253 RepID=I2QUT8_9BRAD
Transposase {ECO:0000313|EMBL:EIG63544.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
putative IS3 family transposase, IS51 group, OrfB
PLM3_60_coex_sep16_scaffold_301_2
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(894..1184)
DNA (291bp) protein (97aa)
transposase IS3 Tax=Mesorhizobium sp. WSM4349 RepID=UPI0003769750
Transposase insN for insertion sequence element IS911 {ECO:0000313|EMBL:GAJ37707.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
tnp; transposase
PLM3_60_coex_sep16_scaffold_301_3
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1252..1416
DNA (165bp) protein (55aa)
UPI0003CEFE85 related cluster Tax=unknown RepID=UPI0003CEFE85
Uncharacterized protein {ECO:0000313|EMBL:ESY76544.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
PLM3_60_coex_sep16_scaffold_301_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1504..2064)
DNA (561bp) protein (187aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_60_coex_sep16_scaffold_301_5

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2410..4101
DNA (1692bp) protein (564aa)
UPI0003CEFE85 related cluster Tax=unknown RepID=UPI0003CEFE85
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48497.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
adenylate cyclase
PLM3_60_coex_sep16_scaffold_301_trna_1
unknown

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comp(4578..4649)
DNA (72bp)
transferRNA Val
PLM3_60_coex_sep16_scaffold_301_6
Hyphomonas sp. T16B2, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4727..5104)
DNA (378bp) protein (126aa)
Response regulator Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C5N2_HYPNA
Response regulator {ECO:0000313|EMBL:KCZ52289.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. T16B2.;"
response regulator
PLM3_60_coex_sep16_scaffold_301_7
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5320..6177
DNA (858bp) protein (286aa)
Hydrolase, putative Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IX51_RHOCS
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:KJB92817.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hydrolase
PLM3_60_coex_sep16_scaffold_301_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6174..6740
DNA (567bp) protein (189aa)
Phosphinothricin acetyltransferase (PPT N-acetyltransferase) Tax=Azospirillum brasilense Sp245 RepID=G8ALY8_AZOBR
GCN5 family acetyltransferase
GCN5 family acetyltransferase {ECO:0000313|EMBL:AIB11722.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM3_60_coex_sep16_scaffold_301_9
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6968..8377
DNA (1410bp) protein (470aa)
murein transglycosylase Tax=Fodinicurvata sediminis RepID=UPI0003B6EB2C
soluble lytic murein transglycosylase and related regulatory protein
Soluble lytic murein transglycosylase and related regulatory protein {ECO:0000313|EMBL:AFK52494.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM3_60_coex_sep16_scaffold_301_10
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8399..10462
DNA (2064bp) protein (688aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
Uncharacterized protein Tax=Caenispirillum salinarum AK4 RepID=K9GWR9_9PROT
putative Sensory transduction histidine kinase
PLM3_60_coex_sep16_scaffold_301_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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10523..11704
DNA (1182bp) protein (394aa)
Aminotransferase, class V superfamily bin=GWC2_Methylomirabilis_70_16 species=Coleofasciculus chthonoplastes genus=Coleofasciculus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
class-V aminotransferase
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_301_12
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11708..12688)
DNA (981bp) protein (327aa)
Mandelate racemase/muconate lactonizing enzyme family protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UD98_MYXSD
Mandelate racemase {ECO:0000313|EMBL:AKH19051.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
mandelate racemase/muconate lactonizing enzyme family protein
PLM3_60_coex_sep16_scaffold_301_13
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12688..13692)
DNA (1005bp) protein (335aa)
hypothetical protein Tax=Fodinicurvata sediminis RepID=UPI0003B40AB3
Uncharacterized protein {ECO:0000313|EMBL:EWY41434.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_301_14
Acaryochloris marina, Acaryochloris, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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13897..14400
DNA (504bp) protein (168aa)
cupin Tax=Acaryochloris sp. CCMEE 5410 RepID=UPI0002484A78
cupin domain-containing protein
Cupin domain protein {ECO:0000313|EMBL:ABW29723.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.;" source="Acaryochloris marina (strain MBIC 11017).;"
PLM3_60_coex_sep16_scaffold_301_15
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

14406..15212
DNA (807bp) protein (269aa)
Uncharacterized protein Tax=Halogranum salarium B-1 RepID=J3JF03_9EURY
hydrolase
Tax=CG_Anaero_02
PLM3_60_coex_sep16_scaffold_301_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15204..15752)
DNA (549bp) protein (183aa)
DinB family protein Tax=Burkholderia graminis C4D1M RepID=B1FV64_9BURK
Putative damage inducible protein {ECO:0000313|EMBL:KFC63867.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
DinB family protein
PLM3_60_coex_sep16_scaffold_301_17
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15834..16319
DNA (486bp) protein (162aa)
UPF0234 protein AZOBR_p1170034 Tax=Azospirillum brasilense Sp245 RepID=G8APR5_AZOBR
conserved protein of unknown function (DUF520 family)
UPF0234 protein AZOBR_p1170034 {ECO:0000256|HAMAP-Rule:MF_00632}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
PLM3_60_coex_sep16_scaffold_301_18
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16349..16693
DNA (345bp) protein (115aa)
Uncharacterized protein Tax=Azospirillum sp. (strain B510) RepID=D3NWQ7_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:KJB96025.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_301_19
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16702..17487)
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LHU5_HALO1
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACY14774.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM3_60_coex_sep16_scaffold_301_20
Synechococcus sp. PCC 7335, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(17496..18374)
DNA (879bp) protein (293aa)
hypothetical protein Tax=Nodosilinea nodulosa RepID=UPI0002FFFBDB
Phytanoyl-CoA dioxygenase (PhyH) superfamily {ECO:0000313|EMBL:EDX87237.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. PCC 7335.;"
mitomycin antibiotics/polyketide fumonisin biosynthesis protein
PLM3_60_coex_sep16_scaffold_301_21
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18542..19954
DNA (1413bp) protein (471aa)
Glu-tRNA amidotransferase, subunit A Tax=Shinella zoogloeoides DD12 RepID=V5ENI5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM34502.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
amidase protein
PLM3_60_coex_sep16_scaffold_301_22
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20261..20881
DNA (621bp) protein (207aa)
hypothetical protein Tax=Meganema perideroedes RepID=UPI00036B2477
Uncharacterized protein {ECO:0000313|EMBL:KJV10564.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
Putative acyltransferase with acyl-CoA N-acyltransferase domain
PLM3_60_coex_sep16_scaffold_301_23
Kingella denitrificans, Kingella, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20897..21871)
DNA (975bp) protein (325aa)
Sel1 repeat protein Tax=Kingella denitrificans ATCC 33394 RepID=F0F1U1_9NEIS
Sel1 repeat protein {ECO:0000313|EMBL:EGC16482.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Kingella.;" source="Kingella denitrificans ATCC 33394.;"
FOG: TPR repeat, SEL1 subfamily
PLM3_60_coex_sep16_scaffold_301_24
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22000..23682
DNA (1683bp) protein (561aa)
thiamine pyrophosphate protein Tax=Ochrobactrum anthropi RepID=UPI000289631B
thiamine pyrophosphate protein
Thiamine pyrophosphate-binding protein {ECO:0000313|EMBL:EXL08426.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
PLM3_60_coex_sep16_scaffold_301_25
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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24130..25029
DNA (900bp) protein (300aa)
Pirin-related protein Tax=Azospirillum amazonense Y2 RepID=G1XXU9_9PROT
Pirin-related protein {ECO:0000313|EMBL:EGY01911.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
pirin
PLM3_60_coex_sep16_scaffold_301_26

Not on your lists

25314..25793
DNA (480bp) protein (160aa)
Putative uncharacterized protein Tax=uncultured organism RepID=Q1EHY9_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:CAK32550.1}; species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
cupin
PLM3_60_coex_sep16_scaffold_301_27
unknown

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comp(25877..26455)
DNA (579bp) protein (193aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_301_28
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26605..28074)
DNA (1470bp) protein (490aa)
Potential multicopper oxidase Tax=Rhizobium sp. (strain NGR234) RepID=C3KQ37_RHISN
Copper oxidase {ECO:0000313|EMBL:KGM32981.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
multicopper oxidase
PLM3_60_coex_sep16_scaffold_301_29
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(28085..28186)
DNA (102bp) protein (34aa)
hypothetical protein Tax=Methylopila sp. M107 RepID=UPI0003736097
Copper-transporting P-type ATPase {ECO:0000313|EMBL:KCZ55169.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
heavy metal translocating P-type ATPase
Displaying 30 items

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