ggKbase home page

PLM3_60_coex_sep16_scaffold_61

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_61_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..1061)
DNA (1059bp) protein (353aa)
HNH endonuclease bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
HNH endonuclease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_61_2
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

1646..2632
DNA (987bp) protein (329aa)
putative 2,6-dihydroxypseudooxynicotine hydrolase bin=CNBR_ACIDO species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative 2,6-dihydroxypseudooxynicotine hydrolase
Tax=GWF2_Lentisphaerae_50_93_curated
PLM3_60_coex_sep16_scaffold_61_3
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2807..3169)
DNA (363bp) protein (121aa)
Putative uncharacterized protein bin=GWC2_Deltaproteobacteria_66_88 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
PLM3_60_coex_sep16_scaffold_61_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(3364..5877)
DNA (2514bp) protein (838aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021T3_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_61_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5980..7380
DNA (1401bp) protein (467aa)
FAD linked oxidase domain protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAR4_ANADF
FAD/FMN-dependent dehydrogenase {ECO:0000313|EMBL:KCZ71095.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
FAD linked oxidase domain-containing protein
PLM3_60_coex_sep16_scaffold_61_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7322..8002)
DNA (681bp) protein (227aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G925_GEOUR
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3_60_coex_sep16_scaffold_61_7
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

8176..9828
DNA (1653bp) protein (551aa)
phosphoglucomutase (EC:5.4.2.2)
Phosphoglucomutase Tax=Rhodovulum sp. PH10 RepID=J6UCP2_9RHOB
Tax=RBG_13_Planctomycetes_60_9_curated
PLM3_60_coex_sep16_scaffold_61_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9903..11153)
DNA (1251bp) protein (417aa)
D-aminopeptidase Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FLH6_STIAD
peptidase S58 DmpA
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3_60_coex_sep16_scaffold_61_9
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11150..12355)
DNA (1206bp) protein (402aa)
methionine synthase (B12-independent) (EC:2.1.1.14)
Methionine synthase (B12-independent) Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024B1_SOLUE
Tax=RBG_16_Planctomycetes_64_12_curated
PLM3_60_coex_sep16_scaffold_61_10
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12508..14250
DNA (1743bp) protein (581aa)
membrane protein Tax=Arenimonas oryziterrae RepID=UPI0003B75C67
Uncharacterized protein {ECO:0000313|EMBL:KFN44825.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
transport protein
PLM3_60_coex_sep16_scaffold_61_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(14274..15065)
DNA (792bp) protein (264aa)
Pyrrolo-quinoline quinone Tax=Chthoniobacter flavus Ellin428 RepID=B4CYI3_9BACT
pyrrolo-quinoline quinone repeat-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_61_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(15026..15694)
DNA (669bp) protein (223aa)
Pyrrolo-quinoline quinone Tax=Schlesneria paludicola RepID=UPI00029B04C7
pyrrolo-quinoline quinone repeat-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_61_13
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(15708..17183)
DNA (1476bp) protein (492aa)
Uncharacterized protein Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SZ48_PLAL2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG69949.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
PLM3_60_coex_sep16_scaffold_61_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17240..20446)
DNA (3207bp) protein (1069aa)
hypothetical protein Tax=Schlesneria paludicola RepID=UPI00029A32EA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31165.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM3_60_coex_sep16_scaffold_61_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(20482..20856)
DNA (375bp) protein (125aa)
hypothetical protein Tax=Bradyrhizobium elkanii RepID=UPI0002FCEBBE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_61_16
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

20968..21855
DNA (888bp) protein (296aa)
id=12556694 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3_60_coex_sep16_scaffold_61_17
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

21830..23977
DNA (2148bp) protein (716aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000361F5CC
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3_60_coex_sep16_scaffold_61_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

24104..26173
DNA (2070bp) protein (690aa)
sulfatase bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
sulfatase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_61_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

26240..26458
DNA (219bp) protein (73aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
prevent-host-death family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_coex_sep16_scaffold_61_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

26445..26807
DNA (363bp) protein (121aa)
PilT protein domain-containing protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_coex_sep16_scaffold_61_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

26820..29024
DNA (2205bp) protein (735aa)
sulfatase bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
sulfatase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_61_22
unknown

Not on your lists

comp(29034..29897)
DNA (864bp) protein (288aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_61_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

30234..30983
DNA (750bp) protein (250aa)
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_61_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

31052..31510
DNA (459bp) protein (153aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=E6QLH6_9ZZZZ
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_61_25
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31628..33457)
DNA (1830bp) protein (610aa)
Glycosyl transferase, family 39 bin=GWC2_Deltaproteobacteria_56_8 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
glycosyl transferase family protein
Tax=GWB2_Deltaproteobacteria_55_19_curated
PLM3_60_coex_sep16_scaffold_61_26
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(33612..36902)
DNA (3291bp) protein (1097aa)
TonB-dependent receptor bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3_60_coex_sep16_scaffold_61_27
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

37012..39012
DNA (2001bp) protein (667aa)
Uncharacterized protein Tax=uncultured bacterium RepID=L7Y6P1_9BACT
O-linked GlcNAc transferase-TPR-containing transmembrane protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_61_28
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(39141..39902)
DNA (762bp) protein (254aa)
Rhomboid family protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAN7_ANADF
rhomboid family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3_60_coex_sep16_scaffold_61_29
unknown

Not on your lists

comp(39955..40257)
DNA (303bp) protein (101aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_61_30
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40346..41560
DNA (1215bp) protein (405aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000360B32D
Low temperature requirement protein LtrA
Low temperature requirement protein LtrA {ECO:0000313|EMBL:CCH30291.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
Displaying items 1-30 of 41 in total

View Taxonomy