ggKbase home page

PLM3_60_coex_sep16_scaffold_293

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_293_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

58..615
DNA (558bp) protein (186aa)
Metal dependent phosphohydrolase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRT6_KORVE
metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

823..1839
DNA (1017bp) protein (339aa)
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

1848..2687
DNA (840bp) protein (280aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_4
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

2684..3622
DNA (939bp) protein (313aa)
ABC transporter-like protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter-like protein
Tax=RBG_16_Acidobacteria_68_9_curated
PLM3_60_coex_sep16_scaffold_293_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

3619..4503
DNA (885bp) protein (295aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative integral membrane protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4742..5776
DNA (1035bp) protein (345aa)
id=12555467 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

5906..6316
DNA (411bp) protein (137aa)
Bll7352 protein Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89DT7_BRADU
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

6477..6863
DNA (387bp) protein (129aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

7062..9434
DNA (2373bp) protein (791aa)
Multi-sensor hybrid histidine kinase Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K101_DEHLB
multi-sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_10
R_OP3X_51_18, OP3X, Bacteria

Not on your lists

9507..9725
DNA (219bp) protein (73aa)
Putative transcriptional regulator, CopG family Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SRX7_9DELT
ribbon-helix-helix protein
Tax=RIFCSPHIGHO2_02_FULL_OP3X_51_18_curated
PLM3_60_coex_sep16_scaffold_293_11
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

9722..10129
DNA (408bp) protein (136aa)
Putative toxin-antitoxin system toxin component, PIN family Tax=Leptolyngbya sp. PCC 6406 RepID=L8L9Z8_9CYAN
protein of unknown function DUF132
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
PLM3_60_coex_sep16_scaffold_293_12
unknown

Not on your lists

10224..10430
DNA (207bp) protein (69aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_293_13
Rhodococcus sp. EsD8, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10491..11417)
DNA (927bp) protein (309aa)
transposase IS1595 Tax=Glaciibacter superstes RepID=UPI0003B51C6E
Uncharacterized protein {ECO:0000313|EMBL:CCW10286.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. EsD8.;"
putative IS1595 family protein
PLM3_60_coex_sep16_scaffold_293_14
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(11611..14562)
DNA (2952bp) protein (984aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI00036AF7AD
TonB-dependent receptor, plug
Tax=RBG_16_Aminicenantes_63_16_curated
PLM3_60_coex_sep16_scaffold_293_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(14848..15621)
DNA (774bp) protein (258aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035EAD72
TPR repeat-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(15638..17635)
DNA (1998bp) protein (666aa)
Uncharacterized protein Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0ICP1_PHYMF
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(17723..20635)
DNA (2913bp) protein (971aa)
TonB-dependent receptor plug Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LZL3_HALO1
TonB-dependent receptor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

21142..22188
DNA (1047bp) protein (349aa)
leuB3; 3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase Tax=Sorangium cellulosum (strain So ce56) RepID=A9FME3_SORC5
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_19
unknown

Not on your lists

comp(22161..22274)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_293_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

22340..23521
DNA (1182bp) protein (394aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67RI3_SYMTH
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_293_21
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(23678..26659)
DNA (2982bp) protein (994aa)
Hypothetical conserved protein Tax=uncultured Acidobacteria bacterium RepID=H5SFF1_9BACT
TonB-dependent Receptor Plug domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3_60_coex_sep16_scaffold_293_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(26823..27494)
DNA (672bp) protein (224aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_coex_sep16_scaffold_293_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

27640..28242
DNA (603bp) protein (201aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16] bin=CNBR_ACIDO species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
folE; GTP cyclohydrolase I
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Displaying 23 items

View Taxonomy