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PLM3_60_coex_sep16_scaffold_814

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_814_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1894)
DNA (1893bp) protein (631aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
Uncharacterized protein Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DJF1_BRAJP
histidine kinase
PLM3_60_coex_sep16_scaffold_814_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2199..3680
DNA (1482bp) protein (494aa)
Transposase, IS66 family Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FPW1_STIAD
transposase, is66 family
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_814_3
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3999..4277
DNA (279bp) protein (93aa)
Putative uncharacterized protein Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YHZ3_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH07230.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_814_4
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4274..4726)
DNA (453bp) protein (151aa)
Type III restriction enzyme, res subunit Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I0R5_DESAP
type III restriction enzyme, res subunit
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:ACA58761.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
PLM3_60_coex_sep16_scaffold_814_5
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4895..7027
DNA (2133bp) protein (711aa)
ATP binding/ATPase (HATPase_c) domain-containing protein Tax=Azotobacter vinelandii RepID=C1DR97_AZOVD
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
ATP binding/ATPase (HATPase_c) domain-containing protein {ECO:0000313|EMBL:ACO79755.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
PLM3_60_coex_sep16_scaffold_814_6
unknown

Not on your lists

7029..8414
DNA (1386bp) protein (462aa)
Uncharacterized protein Tax=Pseudomonas aeruginosa BWHPSA026 RepID=U8NBD0_PSEAI
PLM3_60_coex_sep16_scaffold_814_7
GWF2_Planctomycetes_41_51_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

8571..10142
DNA (1572bp) protein (524aa)
hypothetical protein Tax=Leucothrix mucor RepID=UPI0003B7784E
Protein of unknown function DUF262
Tax=GWF2_Planctomycetes_41_51_curated
PLM3_60_coex_sep16_scaffold_814_8
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10343..11269)
DNA (927bp) protein (309aa)
Uncharacterized protein Tax=Roseovarius sp. 217 RepID=A3W981_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EQB33775.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_814_9
Chroococcales cyanobacterium CENA595, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(11324..12754)
DNA (1431bp) protein (477aa)
hypothetical protein Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00036584FC
Uncharacterized protein {ECO:0000313|EMBL:KJH69544.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales.;" source="Chroococcales cyanobacterium CENA595.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_814_10
Chroococcales cyanobacterium CENA595, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(12751..14106)
DNA (1356bp) protein (452aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9X9W6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJH69545.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales.;" source="Chroococcales cyanobacterium CENA595.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_814_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(14230..14592)
DNA (363bp) protein (121aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XI10_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60503.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM3_60_coex_sep16_scaffold_814_12
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14900..15106
DNA (207bp) protein (69aa)
DNA-binding protein Tax=Thauera terpenica 58Eu RepID=T0ARJ8_9RHOO
DNA-binding protein {ECO:0000313|EMBL:EPZ15464.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
excisionase family DNA binding domain-containing protein
PLM3_60_coex_sep16_scaffold_814_13
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15161..15838
DNA (678bp) protein (226aa)
RNA polymerase sigma factor Tax=Thauera sp. (strain MZ1T) RepID=C4ZMT1_THASP
sigma-70 region 2 domain-containing protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_60_coex_sep16_scaffold_814_14
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15813..17324
DNA (1512bp) protein (504aa)
sigma 38, RpoS; K03086 RNA polymerase primary sigma factor bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
RNA polymerase sigma-32 subunit RpoH
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_60_coex_sep16_scaffold_814_15
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17311..18816
DNA (1506bp) protein (502aa)
Uncharacterized protein Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RPN9_9PROT
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_60_coex_sep16_scaffold_814_16
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18824..21685
DNA (2862bp) protein (954aa)
Uncharacterized protein Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RPP0_9PROT
endonuclease
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_60_coex_sep16_scaffold_814_17
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21669..22703
DNA (1035bp) protein (345aa)
Uncharacterized protein Tax=Rhodanobacter fulvus Jip2 RepID=I4W0H3_9GAMM
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_60_coex_sep16_scaffold_814_18
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22694..23935
DNA (1242bp) protein (414aa)
Uncharacterized protein Tax=Herminiimonas arsenicoxydans RepID=A4G660_HERAR
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_60_coex_sep16_scaffold_814_19
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23881..24450
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=Herminiimonas arsenicoxydans RepID=A4G660_HERAR
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_60_coex_sep16_scaffold_814_20
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24497..25948)
DNA (1452bp) protein (484aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain K).;"
Cytosine-specific methyltransferase Tax=Anaeromyxobacter sp. (strain K) RepID=B4UFN0_ANASK
DNA-cytosine methyltransferase
PLM3_60_coex_sep16_scaffold_814_21
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25948..28017)
DNA (2070bp) protein (690aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain K).;"
Histidine kinase Tax=Anaeromyxobacter sp. (strain K) RepID=B4UFM9_ANASK
histidine kinase
PLM3_60_coex_sep16_scaffold_814_22
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28018..29799)
DNA (1782bp) protein (594aa)
DNA-cytosine methyltransferase Tax=Anaeromyxobacter sp. (strain K) RepID=B4UFM8_ANASK
DNA-cytosine methyltransferase
DNA-cytosine methyltransferase {ECO:0000313|EMBL:ACG75155.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain K).;"
PLM3_60_coex_sep16_scaffold_814_23
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29801..30070)
DNA (270bp) protein (90aa)
Transcriptional regulator, XRE family Tax=Anaeromyxobacter sp. (strain K) RepID=B4UFM7_ANASK
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACG75154.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain K).;"
PLM3_60_coex_sep16_scaffold_814_24
unknown

Not on your lists

30179..30364
DNA (186bp) protein (62aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_814_25
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

31066..33735
DNA (2670bp) protein (890aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3_60_coex_sep16_scaffold_814_26

Not on your lists

33732..34979
DNA (1248bp) protein (416aa)
peptidase S41 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:CBH99743.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
carboxyl-terminal protease
PLM3_60_coex_sep16_scaffold_814_27
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(34991..35695)
DNA (705bp) protein (235aa)
id=12557499 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3_60_coex_sep16_scaffold_814_28
unknown

Not on your lists

comp(35779..36327)
DNA (549bp) protein (183aa)
id=12555026 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PLM3_60_coex_sep16_scaffold_814_29
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

36586..36915
DNA (330bp) protein (110aa)
hypothetical protein; K03197 type IV secretion system protein VirB2 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_814_30
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

36947..37243
DNA (297bp) protein (99aa)
hypothetical protein bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Displaying items 1-30 of 33 in total

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