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PLM3_60_coex_sep16_scaffold_6290

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_6290_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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3..305
DNA (303bp) protein (101aa)
50S ribosomal protein L6 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplF; 50S ribosomal protein L6
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_6290_2
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


323..688
DNA (366bp) protein (122aa)
50S ribosomal protein L18 bin=GWD2_Deltaproteobacteria_55_8 species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
50S ribosomal protein L18
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_6290_3
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


714..1211
DNA (498bp) protein (166aa)
30S ribosomal protein S5 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpsE; 30S ribosomal protein S5
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_6290_4
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1371..1661
DNA (291bp) protein (97aa)
50S ribosomal protein L15 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplO; 50S ribosomal protein L15
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_60_coex_sep16_scaffold_6290_5
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1654..2964
DNA (1311bp) protein (437aa)
Protein translocase subunit SecY Tax=Desulfococcus multivorans DSM 2059 RepID=S7T9D4_DESML
secY; preprotein translocase subunit SecY
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_6290_6
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2968..3633
DNA (666bp) protein (222aa)
Adenylate kinase bin=GWD2_Deltaproteobacteria_55_8 species=Archaeoglobus veneficus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
adenylate kinase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_6290_7
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3630..4388
DNA (759bp) protein (253aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_6290_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4415..4633
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
translation initiation factor 1
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_6290_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4828..5208
DNA (381bp) protein (127aa)
30S ribosomal protein S13 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
30S ribosomal protein S13
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_60_coex_sep16_scaffold_6290_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5236..5664
DNA (429bp) protein (143aa)
30S ribosomal protein S11 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
30S ribosomal protein S11
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_6290_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5686..6312
DNA (627bp) protein (209aa)
30S ribosomal protein S4 Tax=Pelobacter propionicus (strain DSM 2379) RepID=RS4_PELPD
rpsD; 30S ribosomal protein S4
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_60_coex_sep16_scaffold_6290_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6335..7363
DNA (1029bp) protein (343aa)
DNA-directed RNA polymerase subunit alpha Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EFS7_GEOBB
rpoA; DNA-directed RNA polymerase subunit alpha
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_6290_13
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7367..7765
DNA (399bp) protein (133aa)
50S ribosomal protein L17 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplQ; 50S ribosomal protein L17
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3_60_coex_sep16_scaffold_6290_14
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7901..8221
DNA (321bp) protein (107aa)
Anti-ECFsigma factor, ChrR bin=GWD2_Deltaproteobacteria_55_8 species=Rhodospirillum photometricum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
anti-ECF sigma factor ChrR
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_60_coex_sep16_scaffold_6290_15
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8255..8470
DNA (216bp) protein (72aa)
Tartronate semialdehyde reductase bin=GWD2_Deltaproteobacteria_55_8 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NADH-dependent gamma-hydroxybutyrate dehydrogenase
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3_60_coex_sep16_scaffold_6290_16
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8433..8975
DNA (543bp) protein (181aa)
glxR; 2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
Tartronate semialdehyde reductase bin=GWD2_Deltaproteobacteria_55_8 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_60_coex_sep16_scaffold_6290_17
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8986..9522
DNA (537bp) protein (179aa)
Probable RNA 2'-phosphotransferase Tax=Thermococcus onnurineus (strain NA1) RepID=KPTA_THEON
RNA 2'-phosphotransferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_6290_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

9531..10316
DNA (786bp) protein (262aa)
hypothetical protein Tax=Algicola sagamiensis RepID=UPI00036D229C
Uncharacterized protein {ECO:0000313|EMBL:EDY15970.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_6290_19
unknown

Not on your lists

10313..10555
DNA (243bp) protein (81aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_6290_20
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10702..12396
DNA (1695bp) protein (565aa)
Arginine--tRNA ligase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
argS; arginyl-tRNA synthetase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_6290_21
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12488..13153
DNA (666bp) protein (222aa)
A rare lipoprotein A bin=GWD2_Deltaproteobacteria_55_8 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rlpA; A rare lipoprotein A
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_6290_22
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13170..13946
DNA (777bp) protein (259aa)
trpGD; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase (EC:4.1.3.27 2.4.2.18)
TrpGD: bifunctional anthranilate synthase, glutamine amidotransferase/anthranilate phosphoribosyltransferase Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LIL8_THEPS
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying 22 items

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