ggKbase home page

PLM3_60_coex_sep16_scaffold_6875

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_6875_1
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34..759)
DNA (726bp) protein (242aa)
Uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM3_60_coex_sep16_scaffold_6875_2
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(838..1239)
DNA (402bp) protein (134aa)
Tetratricopeptide TPR_1 repeat-containing protein Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YUD5_DESAF
hypothetical protein
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:EGJ48817.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
PLM3_60_coex_sep16_scaffold_6875_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1310..1633)
DNA (324bp) protein (108aa)
Glutaredoxin Tax=uncultured bacterium RepID=Q6RJL3_9BACT
grxD; glutaredoxin
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_6875_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1669..1923)
DNA (255bp) protein (85aa)
BolA family protein bin=GWD2_Deltaproteobacteria_55_8 species=Gloeocapsa sp. PCC 7428 genus=Gloeocapsa taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
BolA family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_6875_5
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1984..2346)
DNA (363bp) protein (121aa)
Cold-shock DNA-binding domain protein bin=GWD2_Deltaproteobacteria_55_8 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
alkyl hydroperoxide reductase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_6875_6
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2359..2487)
DNA (129bp) protein (43aa)
id=1956125 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_60_coex_sep16_scaffold_6875_7
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2531..3511)
DNA (981bp) protein (327aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_6875_8
unknown

Not on your lists

comp(3579..3776)
DNA (198bp) protein (66aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_6875_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3812..4555)
DNA (744bp) protein (248aa)
short-chain dehydrogenase/reductase SDR bin=bin1_lowGC species=Microbulbifer agarilyticus genus=Microbulbifer taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_60_coex_sep16_scaffold_6875_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4588..5538
DNA (951bp) protein (317aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
abortive infection protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_6875_11
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5486..6052)
DNA (567bp) protein (189aa)
GDSL-like Lipase/Acylhydrolase family protein bin=GWD2_Deltaproteobacteria_55_8 species=Xenococcus sp. PCC 7305 genus=Xenococcus taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
GDSL family lipase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_6875_12
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(6137..7528)
DNA (1392bp) protein (464aa)
MmgE/PrpD family protein bin=GWD2_Deltaproteobacteria_55_8 species=Oceanicola granulosus genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
MmgE/PrpD family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3_60_coex_sep16_scaffold_6875_13
Desulfobacula toluolica, Desulfobacula, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7670..8506
DNA (837bp) protein (279aa)
hypothetical protein Tax=Flexithrix dorotheae RepID=UPI00037D05DE
hypothetical protein
Conserved uncharacterized protein {ECO:0000313|EMBL:CCK78483.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacula.;" source="Desulfobacula toluolica (strain DSM 7467 / Tol2).;"
PLM3_60_coex_sep16_scaffold_6875_14
unknown

Not on your lists

8513..8860
DNA (348bp) protein (116aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_6875_15
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

8877..10019
DNA (1143bp) protein (381aa)
Glutathionylspermidine synthase Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V3W8_TERSS
glutathionylspermidine synthase
Glutathionylspermidine synthase {ECO:0000313|EMBL:ADV81382.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
PLM3_60_coex_sep16_scaffold_6875_16
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10144..10386)
DNA (243bp) protein (81aa)
ABC peptide transporter, periplasmic ligand binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter substrate-binding protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Displaying 16 items

View Taxonomy