ggKbase home page

PLM3_60_coex_sep16_scaffold_10681

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_10681_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..358
DNA (357bp) protein (119aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Anaerobaculum hydrogeniformans genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
alpha-galactosidase family protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_60_coex_sep16_scaffold_10681_2
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

355..1287
DNA (933bp) protein (311aa)
phosphonate-transporting ATPase (EC:3.6.3.28)
Phosphonate-transporting ATPase bin=GWD2_Deltaproteobacteria_55_8 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_10681_3
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1292..2218
DNA (927bp) protein (309aa)
ABC-type transport system bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC-type transport system involved in multi-copper enzyme maturation, permease component
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3_60_coex_sep16_scaffold_10681_4
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2426..3853
DNA (1428bp) protein (476aa)
Putative carboxylyase-like protein (Fragment) bin=GWD2_Deltaproteobacteria_55_8 species=Clostridia bacterium enrichment culture clone BF genus=unknown taxon_order=unknown taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
UbiD family decarboxylase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_60_coex_sep16_scaffold_10681_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3951..4457)
DNA (507bp) protein (169aa)
(2Fe-2S)-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
(2Fe-2S)-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_10681_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4651..5124)
DNA (474bp) protein (158aa)
Molybdopterin dehydrogenase, FAD-binding bin=GWD2_Deltaproteobacteria_55_8 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
molybdopterin dehydrogenase, FAD-binding
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_10681_7
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5126..5365)
DNA (240bp) protein (80aa)
Uncharacterized protein bin=GWA2_OP3_52_12 species=Bradyrhizobium sp. WSM1253 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3_60_coex_sep16_scaffold_10681_8
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5671..6633)
DNA (963bp) protein (321aa)
RNA polymerase sigma factor bin=GWA2_OP3_52_12 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
sigma-70 region 2 domain-containing protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3_60_coex_sep16_scaffold_10681_9
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6769..7107)
DNA (339bp) protein (113aa)
DNA-directed RNA polymerase subunit omega bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
DNA-directed RNA polymerase subunit omega
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_10681_10
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7249..7458)
DNA (210bp) protein (70aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_10681_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7661..8062)
DNA (402bp) protein (134aa)
Endoribonuclease L-PSP bin=GWA2_OP3_52_12 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
endoribonuclease L-PSP
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_60_coex_sep16_scaffold_10681_12
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8088..8489)
DNA (402bp) protein (134aa)
Luciferase-like monooxygenase family protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrososphaera gargensis genus=Nitrososphaera taxon_order=Nitrososphaerales taxon_class=unknown phylum=Thaumarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying 12 items

View Taxonomy