ggKbase home page

PLM3_60_coex_sep16_scaffold_5572

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_5572_1
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..505)
DNA (504bp) protein (168aa)
Putative efflux RND transporter protein Tax=uncultured bacterium RepID=L7RXJ6_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_5572_2
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(732..1757)
DNA (1026bp) protein (342aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM3_60_coex_sep16_scaffold_5572_3
unknown

Not on your lists

1879..2031
DNA (153bp) protein (51aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_5572_4
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2069..3061)
DNA (993bp) protein (331aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NMT1/THI5 like domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_5572_5
unknown

Not on your lists

3240..3428
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_5572_6
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3610..3975
DNA (366bp) protein (122aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2IN42_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_60_coex_sep16_scaffold_5572_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4046..5362)
DNA (1317bp) protein (439aa)
Major facilitator superfamily MFS_1 bin=GWD2_Deltaproteobacteria_55_8 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
sugar phosphate permease
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_5572_8
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5609..6655
DNA (1047bp) protein (349aa)
id=2052372 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate transport system ABC transporter periplasmic solute-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_5572_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6763..9117)
DNA (2355bp) protein (785aa)
Putative helicase (EC:3.6.4.-)
Type III restriction protein res subunit bin=GWA2_Elusimicrobia_56_46 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_5572_10
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9188..9880)
DNA (693bp) protein (231aa)
BsuBI/PstI restriction endonuclease C-terminus (EC:3.1.21.4)
UPI0003CFAF92 related cluster Tax=unknown RepID=UPI0003CFAF92
Tax=RBG_16_Deltaproteobacteria_58_17_curated
PLM3_60_coex_sep16_scaffold_5572_11
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10022..10249)
DNA (228bp) protein (76aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Burkholderia sp. BT03 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
Displaying 11 items

View Taxonomy