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PLM3_60_coex_sep16_scaffold_2077

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2077_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(128..970)
DNA (843bp) protein (281aa)
Hydroxycinnamoyl-CoA hydratase-lyase bin=GWD2_Deltaproteobacteria_55_8 species=Pseudomonas sp. HPB0071 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
p-hydroxycinnamoyl CoA hydratase/lyase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_2077_2
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1160..1948)
DNA (789bp) protein (263aa)
Maleylacetoacetate isomerase bin=GWD2_Deltaproteobacteria_55_8 species=gamma proteobacterium NOR5-3 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glutathione S-transferase-like protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_60_coex_sep16_scaffold_2077_3
Vibrio campbellii, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1951..2487)
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Vibrio campbellii CAIM 519 = NBRC 15631 RepID=L8XAS4_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:ELU49468.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio campbellii CAIM 519 = NBRC 15631.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_2077_4
unknown

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comp(2484..2627)
DNA (144bp) protein (48aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2077_5
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2624..3499)
DNA (876bp) protein (292aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Rhizobium sp. CF080 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter substrate-binding protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3_60_coex_sep16_scaffold_2077_6
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3508..4038)
DNA (531bp) protein (177aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003769EF4
Uncharacterized protein {ECO:0000313|EMBL:ETX00573.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
dioxygenase
PLM3_60_coex_sep16_scaffold_2077_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4276..5571
DNA (1296bp) protein (432aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
MFS-type transporter
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_2077_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5693..6454
DNA (762bp) protein (254aa)
Maleate cis-trans isomerase bin=GWC2_Syntrophus__56_31 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_60_coex_sep16_scaffold_2077_9
unknown

Not on your lists

6536..6673
DNA (138bp) protein (46aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2077_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6911..8440
DNA (1530bp) protein (510aa)
RNA polymerase sigma factor bin=GWD2_Deltaproteobacteria_55_8 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpoD; RNA polymerase sigma-70 factor RpoD
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_2077_11
unknown

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comp(8437..8640)
DNA (204bp) protein (68aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2077_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8780..9991)
DNA (1212bp) protein (404aa)
hypothetical protein Tax=Bacillus sp. L1(2012) RepID=UPI0003469E62
rieske 2Fe-2S iron-sulfur domain protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_2077_13
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(10152..10781)
DNA (630bp) protein (210aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_16_RIF03_38_10_curated
PLM3_60_coex_sep16_scaffold_2077_14
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11112..11342)
DNA (231bp) protein (77aa)
Thiamine pyrophosphate enzyme TPP binding domain protein Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAN4_PELHB
thiamine pyrophosphate enzyme TPP binding domain-containing protein
Thiamine pyrophosphate enzyme TPP binding domain protein {ECO:0000313|EMBL:AEQ52557.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
Displaying 14 items

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