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PLM3_60_coex_sep16_scaffold_6225

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_6225_1
unknown

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comp(1..822)
DNA (822bp) protein (274aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_6225_2
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(837..1556)
DNA (720bp) protein (240aa)
50S ribosomal protein L1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SHB9_GEOOG
50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM3_60_coex_sep16_scaffold_6225_3
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1628..2071)
DNA (444bp) protein (148aa)
50S ribosomal protein L11 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A3B2_THECD
50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_60_coex_sep16_scaffold_6225_4
RBG_13_Actinobacteria_55_18_curated, Actinobacteria, Bacteria

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comp(2105..2671)
DNA (567bp) protein (189aa)
Transcription termination/antitermination protein NusG Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z0F0_9ACTN
NusG; transcription antiterminator
Tax=RBG_13_Actinobacteria_55_18_curated
PLM3_60_coex_sep16_scaffold_6225_5
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(2710..3042)
DNA (333bp) protein (111aa)
hypothetical protein Tax=Actinoalloteichus spitiensis RepID=UPI000366B535
protein translocation complex preprotein translocase subunit
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_6225_trna_1
unknown

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comp(3113..3192)
DNA (80bp)
transferRNA Trp
PLM3_60_coex_sep16_scaffold_6225_6
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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3380..5461
DNA (2082bp) protein (694aa)
Outer membrane adhesin-like protein Tax=Actinoplanes sp. N902-109 RepID=R4LPG2_9ACTO
outer membrane adhesin-like protein
Outer membrane adhesin-like protein {ECO:0000313|EMBL:AGL21292.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM3_60_coex_sep16_scaffold_6225_7
unknown

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comp(5492..5899)
DNA (408bp) protein (136aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_6225_8
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(5896..6330)
DNA (435bp) protein (145aa)
RNA polymerase sigma factor, sigma-70 family Tax=Pseudomonas stutzeri RCH2 RepID=L0GRE1_PSEST
sigma-70 family RNA polymerase sigma factor
Tax=RBG_16_Actinobacteria_70_17_curated
PLM3_60_coex_sep16_scaffold_6225_9
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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comp(6480..7412)
DNA (933bp) protein (311aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIB0_THET1
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3_60_coex_sep16_scaffold_6225_10
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7415..7828)
DNA (414bp) protein (138aa)
MaoC domain protein dehydratase Tax=Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488) RepID=D7B8H6_NOCDD
MaoC domain-containing protein dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ADH70484.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
PLM3_60_coex_sep16_scaffold_6225_11
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7923..8369)
DNA (447bp) protein (149aa)
UPF0336 protein SACE_6876 Tax=Saccharopolyspora erythraea RepID=Y6876_SACEN
UPF0336 protein GU90_05575 {ECO:0000256|HAMAP-Rule:MF_00799}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_6225_12
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8360..8512)
DNA (153bp) protein (51aa)
50S ribosomal protein L33 Tax=Desulforudis audaxviator (strain MP104C) RepID=RL33_DESAP
50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000255|HAMAP-Rule:MF_00294}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
Displaying 13 items

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