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PLM3_60_coex_sep16_scaffold_4215

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_4215_1
Deinococcus sp. RL, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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1..579
DNA (579bp) protein (193aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI000371D132
Uncharacterized protein {ECO:0000313|EMBL:KEF35264.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus sp. RL.;"
PLM3_60_coex_sep16_scaffold_4215_2
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(626..1249)
DNA (624bp) protein (208aa)
formimidoyltetrahydrofolate cyclodeaminase (EC:4.3.1.4)
Formimidoyltetrahydrofolate cyclodeaminase {ECO:0000313|EMBL:ABG05438.1}; EC=4.3.1.4 {ECO:0000313|EMBL:ABG05438.1};; Formiminotransferase-cyclodeaminase {ECO:0000313|EMBL:ABG04529.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Formimidoyltetrahydrofolate cyclodeaminase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AT40_RUBXD
PLM3_60_coex_sep16_scaffold_4215_3
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(1246..2949)
DNA (1704bp) protein (568aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
Formate--tetrahydrofolate ligase Tax=Saccharopolyspora erythraea RepID=FTHS_SACEN
Formyltetrahydrofolate synthetase
PLM3_60_coex_sep16_scaffold_4215_4
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2953..3660)
DNA (708bp) protein (236aa)
Sarcosine oxidase gamma subunit Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CLL0_PSEUX
sarcosine oxidase subunit gamma
Sarcosine oxidase gamma subunit {ECO:0000313|EMBL:AEA27063.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_4215_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3653..5245)
DNA (1593bp) protein (531aa)
sarcosine oxidase (EC:1.5.3.1)
Sarcosine oxidase {ECO:0000313|EMBL:AEA27062.1}; EC=1.5.3.1 {ECO:0000313|EMBL:AEA27062.1};; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Sarcosine oxidase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CLK9_PSEUX
PLM3_60_coex_sep16_scaffold_4215_6
unknown

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5627..5824
DNA (198bp) protein (66aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_4215_7
unknown

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6035..6373
DNA (339bp) protein (113aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_4215_8
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(6327..6587)
DNA (261bp) protein (87aa)
Sarcosine oxidase delta subunit heterotetrameric Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CLK8_PSEUX
sarcosine oxidase subunit delta
Sarcosine oxidase delta subunit heterotetrameric {ECO:0000313|EMBL:AEA27061.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_4215_9
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(6617..7333)
DNA (717bp) protein (239aa)
FAD dependent oxidoreductase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CLK7_PSEUX
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:AEA27060.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_4215_10
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7330..7803)
DNA (474bp) protein (158aa)
FAD dependent oxidoreductase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CLK7_PSEUX
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:AEA27060.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_4215_11
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7952..8584)
DNA (633bp) protein (211aa)
DNA-binding protein Tax=Streptomyces acidiscabies RepID=UPI0002881348
Transcriptional regulator, XRE family with cupin sensor {ECO:0000313|EMBL:KJE25465.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
HTH-type transcriptional regulator
PLM3_60_coex_sep16_scaffold_4215_12
unknown

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8939..9142
DNA (204bp) protein (68aa)
hypothetical protein Tax=Mycobacterium sp. 141 RepID=UPI00036B0C27
PLM3_60_coex_sep16_scaffold_4215_13
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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9133..10449
DNA (1317bp) protein (439aa)
hypothetical protein Tax=Mycobacterium sp. 141 RepID=UPI00036B0C27
Putative amino acid transporter {ECO:0000313|EMBL:GAB16142.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
amino acid transporter
PLM3_60_coex_sep16_scaffold_4215_14
unknown

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10499..10975
DNA (477bp) protein (159aa)
hypothetical protein Tax=Mycobacterium sp. 141 RepID=UPI00036CAFB0
PLM3_60_coex_sep16_scaffold_4215_15
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10968..12329
DNA (1362bp) protein (454aa)
glutamine synthetase I (EC:6.3.1.2)
Glutamine synthetase, type III {ECO:0000313|EMBL:AEA27059.1}; EC=6.3.1.2 {ECO:0000313|EMBL:AEA27059.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Glutamine synthetase, type III Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CLK6_PSEUX
PLM3_60_coex_sep16_scaffold_4215_16
Nitrincola sp. A-D6, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12423..13319
DNA (897bp) protein (299aa)
Uncharacterized protein Tax=Acinetobacter sp. ANC 3789 RepID=N8U124_9GAMM
Amidophosphoribosyltransferase {ECO:0000313|EMBL:KGK41112.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola sp. A-D6.;"
glutamine amidotransferase
PLM3_60_coex_sep16_scaffold_4215_17
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13307..13984
DNA (678bp) protein (226aa)
Glutamate synthase family protein Tax=Frankia sp. QA3 RepID=I8QTR1_9ACTO
Glutamate synthase family protein {ECO:0000313|EMBL:EIV93449.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
glxC; glutamate synthase subunit alpha
PLM3_60_coex_sep16_scaffold_4215_18
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14192..14404)
DNA (213bp) protein (71aa)
hypothetical protein Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B57895
Putative uncharacterized protein {ECO:0000313|EMBL:EHH09437.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
PLM3_60_coex_sep16_scaffold_4215_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15145..15327
DNA (183bp) protein (61aa)
ferredoxin-dependent glutamate synthase bin=GWF1_Burkholderiales_GWF1_66_17 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ferredoxin-dependent glutamate synthase
Tax=GWE1_Burkholderiales_65_30_curated
PLM3_60_coex_sep16_scaffold_4215_20
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15340..17448)
DNA (2109bp) protein (703aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
Uncharacterized protein Tax=Frankia alni (strain ACN14a) RepID=Q0RHI7_FRAAA
hypothetical protein
PLM3_60_coex_sep16_scaffold_4215_21
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17571..18512
DNA (942bp) protein (314aa)
ABC transporter, substrate-binding protein, family 3 Tax=Streptomyces ipomoeae 91-03 RepID=L1KZQ6_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KDS89812.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
secreted protein
PLM3_60_coex_sep16_scaffold_4215_22
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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18714..19589
DNA (876bp) protein (292aa)
Cellulose-binding protein Tax=Thermobifida fusca RepID=R9F560_THEFU
cellulose-binding protein
Putative cellulose-binding protein {ECO:0000313|EMBL:AAZ56429.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
PLM3_60_coex_sep16_scaffold_4215_23
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19685..19987)
DNA (303bp) protein (101aa)
hypothetical protein Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI00036DF161
Uncharacterized protein {ECO:0000313|EMBL:KJK12374.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
carbohydrate-binding protein
Displaying 23 items

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