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PLM3_60_coex_sep16_scaffold_4608

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_4608_1
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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comp(3..1217)
DNA (1215bp) protein (405aa)
Uncharacterized protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TXH0_9CHLR
histidine kinase
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3_60_coex_sep16_scaffold_4608_2
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1307..3100)
DNA (1794bp) protein (598aa)
Peptidase S9 prolyl oligopeptidase active site domain protein Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A8A0_THECD
peptidase S9 prolyl oligopeptidase active site domain-containing protein
Peptidase S9 prolyl oligopeptidase active site domain protein {ECO:0000313|EMBL:ACZ00415.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_60_coex_sep16_scaffold_4608_3
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

3627..5306
DNA (1680bp) protein (560aa)
Acetyl-CoA synthetase family protein bin=GWC2_Chloroflexi_73_18 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
AMP-dependent synthetase and ligase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_4608_4
Pseudomonas sp. AAC, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5334..6644)
DNA (1311bp) protein (437aa)
Tat-translocated enzyme Tax=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) RepID=Q1QSA2_CHRSD
Peroxidase {ECO:0000313|EMBL:KES23428.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. AAC.;"
Tat-translocated enzyme
PLM3_60_coex_sep16_scaffold_4608_5
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

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6892..7452
DNA (561bp) protein (187aa)
Putative RNA polymerase ECF-subfamily sigma factor Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W1V9_9ACTO
putative RNA polymerase ECF-subfamily sigma factor
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3_60_coex_sep16_scaffold_4608_6
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

7449..8357
DNA (909bp) protein (303aa)
Putative uncharacterized protein Tax=Micromonospora sp. ATCC 39149 RepID=C4RNN0_9ACTO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PLM3_60_coex_sep16_scaffold_4608_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8354..8938)
DNA (585bp) protein (195aa)
Peptidase M64, IgA Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NPR8_GRAMM
Uncharacterized protein {ECO:0000313|EMBL:KIO48345.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Peptidase M64, IgA
PLM3_60_coex_sep16_scaffold_4608_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9097..9585)
DNA (489bp) protein (163aa)
Putative uncharacterized protein Tax=Gordonia effusa NBRC 100432 RepID=H0R2E6_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KIO48346.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
PLM3_60_coex_sep16_scaffold_4608_9
unknown

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comp(11150..11272)
DNA (123bp) protein (41aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_4608_10
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(11303..12286)
DNA (984bp) protein (328aa)
Mg2 transporter protein CorA family protein Tax=Frankia sp. (strain EuI1c) RepID=E3JB47_FRASU
Mg2 transporter protein CorA
Mg2 transporter protein CorA family protein {ECO:0000313|EMBL:ADP84668.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_60_coex_sep16_scaffold_4608_11
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12402..13838)
DNA (1437bp) protein (479aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
Argininosuccinate lyase Tax=Frankia sp. CN3 RepID=G6HPC2_9ACTO
argininosuccinate lyase
PLM3_60_coex_sep16_scaffold_4608_12
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13831..14646)
DNA (816bp) protein (272aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
argininosuccinate synthase (EC:6.3.4.5)
argininosuccinate synthase Tax=Frankia sp. BMG5.12 RepID=UPI00038014A7
PLM3_60_coex_sep16_scaffold_4608_13
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(14748..15050)
DNA (303bp) protein (101aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC; 103882 / ICP).;"
Argininosuccinate synthase Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M0R7_ACIFD
PLM3_60_coex_sep16_scaffold_4608_14
Tsukamurella paurometabola, Tsukamurella, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15047..15574)
DNA (528bp) protein (176aa)
Arginine repressor Tax=Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) RepID=D5UR15_TSUPD
arginine repressor ArgR
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; species="Bacteria; Actinobacteria; Corynebacteriales; Tsukamurellaceae; Tsukamurella.;" source="Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 /; NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum).;"
PLM3_60_coex_sep16_scaffold_4608_15
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15565..16794)
DNA (1230bp) protein (410aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
Acetylornithine aminotransferase Tax=Streptomyces auratus AGR0001 RepID=J1RG10_9ACTO
argD; acetylornithine aminotransferase
PLM3_60_coex_sep16_scaffold_4608_16
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16838..17788)
DNA (951bp) protein (317aa)
Acetylglutamate kinase {ECO:0000255|HAMAP-Rule:MF_00082}; EC=2.7.2.8 {ECO:0000255|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000255|HAMAP-Rule:MF_00082}; Short=AGK {ECO:0000255|HAMAP-Rule:MF_00082};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
Acetylglutamate kinase Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=ARGB_SYMTH
acetylglutamate kinase
PLM3_60_coex_sep16_scaffold_4608_17
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17785..19227)
DNA (1443bp) protein (481aa)
Arginine biosynthesis bifunctional protein ArgJ Tax=Pedosphaera parvula Ellin514 RepID=B9XQ46_9BACT
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
ArgJ
PLM3_60_coex_sep16_scaffold_4608_18
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19224..20267)
DNA (1044bp) protein (348aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
N-acetyl-gamma-glutamyl-phosphate reductase Tax=Modestobacter marinus (strain BC501) RepID=I4EZ16_MODMB
PLM3_60_coex_sep16_scaffold_4608_19
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20515..21777
DNA (1263bp) protein (421aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
Diaminopimelate decarboxylase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UIT9_MYXSD
diaminopimelate decarboxylase
PLM3_60_coex_sep16_scaffold_4608_20
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21950..22651
DNA (702bp) protein (234aa)
msmX; Maltodextrin import ATP-binding protein MsmX (EC:3.6.3.-)
Putative ABC transporter ATP-binding protein Tax=Gordonia hirsuta DSM 44140 = NBRC 16056 RepID=L7L9P4_9ACTO
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EWT06856.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
Displaying 20 items

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