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PLM3_60_coex_sep16_scaffold_4952

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_4952_1
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(83..1171)
DNA (1089bp) protein (363aa)
mannose-6-phosphate isomerase (EC:5.3.1.8)
Mannose-6-phosphate isomerase {ECO:0000313|EMBL:ACY99590.1}; EC=5.3.1.8 {ECO:0000313|EMBL:ACY99590.1};; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI00036CFFC5
PLM3_60_coex_sep16_scaffold_4952_2
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(1168..1347)
DNA (180bp) protein (60aa)
protein of unknown function DUF343
Putative uncharacterized protein bin=GWB2_Nitrospirae_rel_47_37 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_4952_3
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(1404..2762)
DNA (1359bp) protein (453aa)
phosphomannomutase (EC:5.4.2.8)
Phosphomannomutase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BEL9_STRRD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_4952_4
unknown

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comp(2947..3123)
DNA (177bp) protein (59aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_4952_5
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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3506..3961
DNA (456bp) protein (152aa)
hypothetical protein Tax=Frankia sp. BCU110501 RepID=UPI00035E4E9D
hypothetical protein
Tax=RBG_13_Chloroflexi_51_52_curated
PLM3_60_coex_sep16_scaffold_4952_6
unknown

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comp(3968..5959)
DNA (1992bp) protein (664aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_4952_7
Brachybacterium faecium, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6006..7199)
DNA (1194bp) protein (398aa)
Putative uncharacterized protein Tax=Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860) RepID=C7ME78_BRAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU85885.1}; species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860).;"
PLM3_60_coex_sep16_scaffold_4952_8
unknown

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7336..7797
DNA (462bp) protein (154aa)
PREDICTED: uncharacterized protein KIAA0754-like Tax=Oreochromis niloticus RepID=UPI0003942FAD
PLM3_60_coex_sep16_scaffold_4952_9
unknown

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7855..8247
DNA (393bp) protein (131aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_4952_10
unknown

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8317..8559
DNA (243bp) protein (81aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_4952_11
Actinomyces massiliensis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(9712..9954)
DNA (243bp) protein (81aa)
transcriptional regulator Tax=Smaragdicoccus niigatensis RepID=UPI00036B23A1
transcription factor WhiB
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces massiliensis F0489.;"
PLM3_60_coex_sep16_scaffold_4952_12

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10187..10903
DNA (717bp) protein (239aa)
RNA polymerase sigma-70 factor, ECF subfamily Tax=uncultured prokaryote RepID=H5SL68_9ZZZZ
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:BAL56904.1}; species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
ECF subfamily RNA polymerase sigma-24 factor
PLM3_60_coex_sep16_scaffold_4952_13
unknown

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10906..11757
DNA (852bp) protein (284aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_4952_14
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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11932..12435
DNA (504bp) protein (168aa)
LPPG domain protein containing protein Tax=Acidovorax delafieldii 2AN RepID=C5TAX6_ACIDE
LPPG domain-containing protein containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3_60_coex_sep16_scaffold_4952_15

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12399..12788
DNA (390bp) protein (130aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00035D9730
Marine sediment metagenome DNA, contig: S01H1_S32495 {ECO:0000313|EMBL:GAG38218.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
2-phospho-L-lactate transferase
PLM3_60_coex_sep16_scaffold_4952_16
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12785..14158
DNA (1374bp) protein (458aa)
cofE; F420-0:gamma-glutamyl ligase (EC:6.3.2.-)
F420-0:gamma-glutamyl ligase {ECO:0000313|EMBL:CCH34848.1}; EC=6.3.2.- {ECO:0000313|EMBL:CCH34848.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
F420-0:gamma-glutamyl ligase Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0KE76_SACES
PLM3_60_coex_sep16_scaffold_4952_17
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

14200..14979
DNA (780bp) protein (260aa)
hypothetical protein bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=CSP1_3_Armatimonadetes
PLM3_60_coex_sep16_scaffold_4952_18
BJP_IG2158_Actinobacteria_57_21, Bacteria

Not on your lists

comp(14989..15972)
DNA (984bp) protein (328aa)
Nucleotidyl transferase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NP37_ROSCS
nucleotidyl transferase
Tax=BJP_IG2158_Actinobacteria_57_21
PLM3_60_coex_sep16_scaffold_4952_19
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(16028..17209)
DNA (1182bp) protein (394aa)
Glycosyl transferase group 1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C274_SPHTD
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACZ38341.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3_60_coex_sep16_scaffold_4952_20
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17206..18336)
DNA (1131bp) protein (377aa)
Glycosyl transferase, group 1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LS12_ACIC1
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABK52222.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_4952_21
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18333..19496)
DNA (1164bp) protein (388aa)
glycosyl transferase family 1 Tax=Frankia sp. BCU110501 RepID=UPI000381CDCA
Glycosyl transferase group 1 {ECO:0000313|EMBL:EFC86277.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
group 1 glycosyl transferase
Displaying 21 items

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