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PLM3_60_coex_sep16_scaffold_2004

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2004_1
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(108..1601)
DNA (1494bp) protein (498aa)
hypothetical protein Tax=Actinokineospora enzanensis RepID=UPI0003815B09
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
aldehyde dehydrogenase
PLM3_60_coex_sep16_scaffold_2004_2
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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comp(1751..3238)
DNA (1488bp) protein (496aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109};; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
6-phosphogluconate dehydrogenase, decarboxylating Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y2G5_THEBD
6-phosphogluconate dehydrogenase
PLM3_60_coex_sep16_scaffold_2004_3
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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3969..4247
DNA (279bp) protein (93aa)
hypothetical protein Tax=Arthrobacter sp. TB 23 RepID=UPI0002FCCB70
NAD(P)H quinone oxidoreductase
NAD(P)H quinone oxidoreductase, PIG3 family {ECO:0000313|EMBL:ACL67550.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258).;"
PLM3_60_coex_sep16_scaffold_2004_4
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4367..5146)
DNA (780bp) protein (260aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. xyli (strain CTCB07).;"
Thiamine-monophosphate kinase Tax=Leifsonia xyli subsp. xyli (strain CTCB07) RepID=Q6AFK0_LEIXX
thiL; thiamine-monophosphate kinase
PLM3_60_coex_sep16_scaffold_2004_5
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(5323..6873)
DNA (1551bp) protein (517aa)
Phosphoenolpyruvate carboxykinase Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TC29_HELMI
pckA; phosphoenolpyruvate carboxykinase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2004_6
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6940..7641)
DNA (702bp) protein (234aa)
hypothetical protein Tax=Streptomyces sp. PsTaAH-124 RepID=UPI000366BC54
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:EYR64995.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
phosphoribosyltransferase
PLM3_60_coex_sep16_scaffold_2004_7
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(8068..9195)
DNA (1128bp) protein (376aa)
serC; Phosphoserine aminotransferase (EC:2.6.1.52)
phosphoserine aminotransferase Tax=Nocardiopsis potens RepID=UPI00036AD967
Phosphoserine aminotransferase {ECO:0000313|EMBL:AKH83024.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
PLM3_60_coex_sep16_scaffold_2004_8
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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9290..10483
DNA (1194bp) protein (398aa)
Aspartate aminotransferase {ECO:0000313|EMBL:ADI09277.1}; EC=2.6.1.1 {ECO:0000313|EMBL:ADI09277.1};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
Aspartate aminotransferase Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7BQR0_STRBB
aspC1; aspartate aminotransferase
PLM3_60_coex_sep16_scaffold_2004_9
Frankia sp. CcI6, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(10470..11369)
DNA (900bp) protein (300aa)
ATP-dependent Clp protease ATP-binding protein Tax=Actinopolymorpha alba RepID=UPI000364BD43
clpB; ATP-dependent protease
ATPase with chaperone activity, ATP-binding subunit {ECO:0000313|EMBL:ETA02686.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CcI6.;"
PLM3_60_coex_sep16_scaffold_2004_10
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(11434..12555)
DNA (1122bp) protein (374aa)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
D-alanine--D-alanine ligase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5A3_SPHTD
PLM3_60_coex_sep16_scaffold_2004_11
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12552..13784)
DNA (1233bp) protein (411aa)
cystathionine gamma-synthase (EC:2.5.1.48)
Cystathionine gamma-synthase {ECO:0000313|EMBL:ACZ85557.1}; EC=2.5.1.48 {ECO:0000313|EMBL:ACZ85557.1};; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
cystathionine gamma-synthase Tax=Nonomuraea coxensis RepID=UPI000378228A
PLM3_60_coex_sep16_scaffold_2004_12
unknown

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comp(13827..14345)
DNA (519bp) protein (173aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2004_13
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14375..15088)
DNA (714bp) protein (238aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI00035F88DD
phospholipid/glycerol acyltransferase
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:AEB43387.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM3_60_coex_sep16_scaffold_2004_14
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

15104..15817
DNA (714bp) protein (238aa)
2-phospho-L-lactate guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114}; Short=LP guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114};; EC=2.7.7.68 {ECO:0000256|HAMAP-Rule:MF_02114};; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
hypothetical protein Tax=Dietzia alimentaria RepID=UPI00029A19EA
2-phospho-L-lactate guanylyltransferase CofC
PLM3_60_coex_sep16_scaffold_2004_15
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15976..16197
DNA (222bp) protein (74aa)
2-phospho-L-lactate guanylyltransferase Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9TEG8_MICAI
Uncharacterized protein {ECO:0000313|EMBL:EWM65501.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
2-phospho-L-lactate guanylyltransferase CofC
PLM3_60_coex_sep16_scaffold_2004_16
Streptomycetaceae bacterium MP113-05, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16272..16775)
DNA (504bp) protein (168aa)
Transcriptional regulator (Fragment) Tax=Streptomycetaceae bacterium MP113-05 RepID=V6LDW3_9ACTO
histone-like DNA-binding protein
Transcriptional regulator {ECO:0000313|EMBL:EST39224.1}; Flags: Fragment;; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae.;" source="Streptomycetaceae bacterium MP113-05.;"
PLM3_60_coex_sep16_scaffold_2004_17
Peptococcaceae bacterium BRH_c4a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17113..18855)
DNA (1743bp) protein (581aa)
Putative histidine protein kinase Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7CG96_STRBB
Uncharacterized protein {ECO:0000313|EMBL:KJS00311.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4a.;"
putative histidine protein kinase
PLM3_60_coex_sep16_scaffold_2004_18
Streptomyces pluripotens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19049..19432
DNA (384bp) protein (128aa)
regulatory protein Tax=Streptomyces sp. 303MFCol5.2 RepID=UPI0003724BDD
putative PAS/PAC sensor protein
PAS/PAC sensor protein {ECO:0000313|EMBL:KIE39846.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pluripotens.;"
PLM3_60_coex_sep16_scaffold_2004_19
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19445..20164)
DNA (720bp) protein (240aa)
Uncharacterized protein Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B4N7_FRADG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH09089.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM3_60_coex_sep16_scaffold_2004_20
Frankia sp. BMG5.23, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(20151..21812)
DNA (1662bp) protein (554aa)
von Willebrand factor, type A Tax=Frankia sp. (strain CcI3) RepID=Q2J8W6_FRASC
von Willebrand factor, type A
Uncharacterized protein {ECO:0000313|EMBL:KDA42411.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. BMG5.23.;"
Displaying 20 items

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