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PLM3_60_coex_sep16_scaffold_1627

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1627_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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93..437
DNA (345bp) protein (115aa)
Uncharacterized protein Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLH7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62920.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
PLM3_60_coex_sep16_scaffold_1627_2
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(523..774)
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=Bradyrhizobium sp. S23321 RepID=I0G870_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL76957.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
PLM3_60_coex_sep16_scaffold_1627_3
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1085..2107
DNA (1023bp) protein (341aa)
TRAP-type C4-dicarboxylate transport system, periplasmic component Tax=Bradyrhizobium sp. WSM471 RepID=H5YHB8_9BRAD
TRAP-type C4-dicarboxylate transport system, periplasmic component {ECO:0000313|EMBL:EHR03279.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
C4-dicarboxylate ABC transporter
PLM3_60_coex_sep16_scaffold_1627_4

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2104..2643
DNA (540bp) protein (180aa)
C4-dicarboxylate ABC transporter Tax=Bradyrhizobium elkanii RepID=UPI0003007858
Tripartite ATP-independent periplasmic transporters, DctQ component {ECO:0000313|EMBL:AIA10731.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative TRAP-type C4-dicarboxylate transport system DctQ subunit
PLM3_60_coex_sep16_scaffold_1627_5
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2640..3998
DNA (1359bp) protein (453aa)
C4-dicarboxylate ABC transporter Tax=Bradyrhizobium japonicum RepID=UPI00035E7C4A
Bradyrhizobium elkanii strain UASWS1015 Contig187, whole genome shotgun sequence {ECO:0000313|EMBL:KIU42872.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
putative TRAP-type C4-dicarboxylate transporter DctM subunit
PLM3_60_coex_sep16_scaffold_1627_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4051..4965)
DNA (915bp) protein (305aa)
Uncharacterized protein Tax=Afipia broomeae ATCC 49717 RepID=K8PB18_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39802.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hmgL; hydroxymethylglutaryl-CoA lyase
PLM3_60_coex_sep16_scaffold_1627_7
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4985..6991)
DNA (2007bp) protein (669aa)
3-methylcrotonyl-CoA carboxylase alpha subunit Tax=Bradyrhizobium sp. S23321 RepID=I0G880_9BRAD
3-methylcrotonyl-CoA carboxylase alpha subunit {ECO:0000313|EMBL:BAL76967.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
mccA; 3-methylcrotonoyl-CoA carboxylase subunit alpha
PLM3_60_coex_sep16_scaffold_1627_8
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6994..8598)
DNA (1605bp) protein (535aa)
propionyl-CoA carboxylase (EC:6.4.1.3)
methylcrotonoyl-CoA carboxylase Tax=Bradyrhizobium elkanii RepID=UPI00036FDD29
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:KJC35509.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
PLM3_60_coex_sep16_scaffold_1627_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8741..9046)
DNA (306bp) protein (102aa)
Putative ETC complex I subunit region protein Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z836_9BRAD
putative ETC complex I subunit region protein
ETC complex I subunit {ECO:0000313|EMBL:KIZ43851.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
PLM3_60_coex_sep16_scaffold_1627_10
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9274..10422
DNA (1149bp) protein (383aa)
Uncharacterized protein Tax=Bradyrhizobium sp. ORS 375 RepID=H0SQC6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD96403.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1627_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10453..12261)
DNA (1809bp) protein (603aa)
Uncharacterized protein Tax=Afipia broomeae ATCC 49717 RepID=K8PAG6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38546.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
carbamoyltransferase
PLM3_60_coex_sep16_scaffold_1627_12
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12636..12941
DNA (306bp) protein (102aa)
Uncharacterized protein Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IN16_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF85290.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1627_13
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13003..13182)
DNA (180bp) protein (60aa)
Uncharacterized protein Tax=Bradyrhizobium sp. S23321 RepID=I0GG89_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL79776.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
PLM3_60_coex_sep16_scaffold_1627_14
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13324..14313)
DNA (990bp) protein (330aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
nrdB; ribonucleoside-diphosphate reductase beta subunit NrdB (EC:1.17.4.1)
ribonucleotide-diphosphate reductase subunit beta Tax=Afipia birgiae RepID=UPI0002F5DF97
PLM3_60_coex_sep16_scaffold_1627_15
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14527..15822)
DNA (1296bp) protein (432aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
nrdA; ribonucleoside-diphosphate reductase alpha subunit NrdA (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase Tax=Afipia broomeae ATCC 49717 RepID=K8PJS3_9BRAD
PLM3_60_coex_sep16_scaffold_1627_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15777..16868)
DNA (1092bp) protein (364aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
nrdA; ribonucleoside-diphosphate reductase alpha subunit NrdA (EC:1.17.4.1)
ribonucleoside-diphosphate reductase Tax=Afipia birgiae RepID=UPI0002E6279C
PLM3_60_coex_sep16_scaffold_1627_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17722..18624)
DNA (903bp) protein (301aa)
Uncharacterized protein Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0A0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31858.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
XRE family transcriptional regulator
Displaying 17 items

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