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PLM3_60_coex_sep16_scaffold_11722_3

Organism: PLM3_60_coex_sep16_Alphaproteobacteria_Rhizobiales_61_7

near complete RP 44 / 55 MC: 5 BSCG 42 / 51 MC: 1 ASCG 7 / 38 MC: 1
Location: comp(1337..2998)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-54 (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 85.0
  • Coverage: 553.0
  • Bit_score: 944
  • Evalue 1.20e-272
RNA polymerase sigma-54 factor Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H3Y3_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 89.0
  • Coverage: 554.0
  • Bit_score: 966
  • Evalue 8.10e-279
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.0
  • Coverage: 554.0
  • Bit_score: 966
  • Evalue 1.10e-278

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Taxonomy

Bradyrhizobium sp. DFCI-1 → Bradyrhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1662
ATGGCTCTGACGCAGAGACTAGAGTTCCGCCAGTCCCAGTCGCTGGTGATGACGCCGCAGCTGATGCAGGCGATTAAGCTGCTGCAGCTGTCGAACCTCGACCTTTCGGCCTTTGTCGAAGAGGAACTGGAGCGAAATCCGCTGCTCGAACGCGCCAGTGACGGCACCGAGCCGCCGGTCGCGGGCGAGCCGGCGCCGGAGCGGGCCGAATTTTCCGACCGCGACGATACAGGTTCCGCCTATGGCGACGACGCAGCCGCCGAGCGTTCCGAAATGGCCAACGGTTCCACCGGCGACGGTTTCGAGCCGGTCCAGGAAGAATGGATGAACAGCGATCTCGGCAGCCGCGCCGAGATCGAGCAGACGCTGGACACTGGCCTCGACAACGTGTTTTCCGAGGAGCCCGCCGAGGCCGCCGCGCGCACCGCGCAGGACGCGGCACCGACCGCGTACACCGAATGGGGCGGCGGCGCCTCCAACGATGACAGTTACAACCTCGAAGCCTTCGTCGCCGCCGAGATCACGCTCGGCAGCCATCTTGCCGAGCAGCTGGCGGTGGCTTTTGCGGCACCCGCGCAGCGCATGATCGGGCAATACCTGATCGATCTGGTCGACGAGGCGGGCTACTTGCCGCCGGACCTGGGGCAGGCCGCCGAGCGGCTCGGCGCATCGCAGCAAGACGTCGAAGCGGTTCTGACCGTGCTGCAGAAATTCGATCCGCCCGGCGTGTGCGCGCGAAGTTTGAGCGAATGCCTGGCAATCCAGCTGCGGGAGCTCAATCGTTACGACCCTGCGATGCAGGCGCTGGTCGAGCATCTGGACCTTCTGGCGAAGCGCGATATCGCTTCCTTGCGAAAATTTTGCGGTGTCGACGATGAGGATATCACCGACATGATCGGCGAAATTCGCCGTCTCGATCCGAAGCCGGGCTTGAAATTCGGTTCGGCCCGGATGCAGACCATGGTGCCGGATGTGTATGTGCGGCCCGGCCCCGATGGCGGCTGGCATGTCGAACTCAACAGCGACACCCTGCCGCGGGTGCTGGTCAATCAGATCTATTACACGGAATTGTCGAAGACGATCCGCAAGGACGGCGACAAGTCCTATTTCACCGATTGCCTGCAGAACGCGACCTGGCTGGTGCGCGCGCTCGATCAGCGCGCCCGAACCATCCTGAAAGTTGCAACCGAAATCGTGCGCCAGCAGGATGGCTTCTTTACCCACGGCGTGGCGCATCTGCGGCCGCTCAACTTGAAGGCGGTGGCGGACGCGATCCAGATGCATGAATCGACGGTGTCGCGGGTAACCGCCAACAAATACATGGCGACCAACCGCGGCAGCTTCGAATTGAAGTATTTCTTTACCGCGTCGATCGCGTCGGCCGACGGCGGCGAAGCCCATTCGGCGGAGGCCGTCCGTCATCACATCAAGCAGCTGATCGATGCGGAAGATCCGGCGGTGATCCTTTCGGACGACACCATCGTGGAACGATTGCGCGAATCGGGCATTGATATTGCCCGCCGCACCGTCGCGAAGTATCGCGAGGCGATGCGCATCCCGTCGTCGGTGCAGCGCCGCCGCGACAAACAAAGCATGCTCGGCAATGCCCTGTCGGCACCTGCCGCCTCGTCCGATCGGTCGCGCGACCCCGCGCCCGTTTGA
PROTEIN sequence
Length: 554
MALTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLSAFVEEELERNPLLERASDGTEPPVAGEPAPERAEFSDRDDTGSAYGDDAAAERSEMANGSTGDGFEPVQEEWMNSDLGSRAEIEQTLDTGLDNVFSEEPAEAAARTAQDAAPTAYTEWGGGASNDDSYNLEAFVAAEITLGSHLAEQLAVAFAAPAQRMIGQYLIDLVDEAGYLPPDLGQAAERLGASQQDVEAVLTVLQKFDPPGVCARSLSECLAIQLRELNRYDPAMQALVEHLDLLAKRDIASLRKFCGVDDEDITDMIGEIRRLDPKPGLKFGSARMQTMVPDVYVRPGPDGGWHVELNSDTLPRVLVNQIYYTELSKTIRKDGDKSYFTDCLQNATWLVRALDQRARTILKVATEIVRQQDGFFTHGVAHLRPLNLKAVADAIQMHESTVSRVTANKYMATNRGSFELKYFFTASIASADGGEAHSAEAVRHHIKQLIDAEDPAVILSDDTIVERLRESGIDIARRTVAKYREAMRIPSSVQRRRDKQSMLGNALSAPAASSDRSRDPAPV*