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PLM3_60_coex_sep16_scaffold_3761

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3761_1
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13..897)
DNA (885bp) protein (295aa)
Transposase Tax=Amycolatopsis mediterranei RepID=G0G964_AMYMS
transposase
Transposase {ECO:0000313|EMBL:AEK39997.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
PLM3_60_coex_sep16_scaffold_3761_2
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

1320..1727
DNA (408bp) protein (136aa)
id=2777647 bin=GWC2_Chloroflexi_73_18 species=Mariniradius saccharolyticus genus=Mariniradius taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_3
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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1727..2575
DNA (849bp) protein (283aa)
Metallo-beta-lactamase family protein bin=GWC2_Chloroflexi_73_18 species=Algoriphagus machipongonensis genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
beta-lactamase superfamily metal-dependent hydrolase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_4
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

2617..3477
DNA (861bp) protein (287aa)
hypothetical protein Tax=Longispora albida RepID=UPI00035EBB3E
5'-3' exonuclease
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_5
unknown

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comp(3312..4082)
DNA (771bp) protein (257aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3761_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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4094..4990
DNA (897bp) protein (299aa)
Putative F420-dependent oxidoreductase bin=GWC2_Chloroflexi_73_18 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
putative F420-dependent oxidoreductase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_7
Knoellia subterranea, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4998..6335
DNA (1338bp) protein (446aa)
aminopeptidase Y (EC:3.4.11.15)
aminopeptidase Y Tax=Nocardiopsis sp. CNS639 RepID=UPI00036498AD
Aminopeptidase Y {ECO:0000313|EMBL:KGN38453.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia subterranea KCTC 19937.;"
PLM3_60_coex_sep16_scaffold_3761_8
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(6328..9576)
DNA (3249bp) protein (1083aa)
adenylyl cyclase class-3/4/guanylyl cyclase bin=bin8_Chloro species=Verrucosispora maris genus=Verrucosispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
adenylyl cyclase class-3/4/guanylyl cyclase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_9
uncultured Desulfofustis sp. PB-SRB1, Desulfofustis, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9824..10561
DNA (738bp) protein (246aa)
Uncharacterized protein Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4JHC1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ESQ11755.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfofustis; environmental samples.;" source="uncultured Desulfofustis sp. PB-SRB1.;"
cyanophycinase
PLM3_60_coex_sep16_scaffold_3761_10
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(10558..10794)
DNA (237bp) protein (79aa)
AsnC family transcriptional regulator Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI000374C32E
AsnC family transcriptional regulator {ECO:0000313|EMBL:KJK11197.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
AsnC family transcriptional regulator
PLM3_60_coex_sep16_scaffold_3761_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(10853..11824)
DNA (972bp) protein (324aa)
Alcohol dehydrogenase GroES-like protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZZ1_RUBXD
alcohol dehydrogenase GroES-like protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_12
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(11844..12614)
DNA (771bp) protein (257aa)
Aldo/keto reductase Tax=mine drainage metagenome RepID=T1CE66_9ZZZZ
aldo/keto reductase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3_60_coex_sep16_scaffold_3761_13
unknown

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comp(13630..14517)
DNA (888bp) protein (296aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3761_14
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

14626..16335
DNA (1710bp) protein (570aa)
Putative Serine-type D-Ala-D-Ala carboxypeptidase Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z0T3_9ACTN
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_15
Mycobacterium phlei, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16332..17060)
DNA (729bp) protein (243aa)
Transcriptional regulator Tax=Mycobacterium phlei RIVM601174 RepID=I0RMX1_MYCPH
Transcriptional regulator {ECO:0000313|EMBL:EID12474.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium phlei RIVM601174.;"
IclR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_3761_16
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

17165..18565
DNA (1401bp) protein (467aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit 1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=LEUC1_RUBXD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

18565..19155
DNA (591bp) protein (197aa)
3-isopropylmalate dehydratase small subunit Tax=Frankia sp. (strain EuI1c) RepID=E3IYX2_FRASU
3-isopropylmalate dehydratase small subunit
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_18
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

19277..21463
DNA (2187bp) protein (729aa)
Putative diguanylate cyclase/phosphodiesterase with PAS sensor Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W5B2_9ACTO
putative diguanylate cyclase/phosphodiesterase with PAS sensor
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_19
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(21473..21988)
DNA (516bp) protein (172aa)
GCN5-related N-acetyltransferase Tax=Amycolatopsis azurea DSM 43854 RepID=M2NSX7_9PSEU
Hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_20
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(22007..23593)
DNA (1587bp) protein (529aa)
putative alpha-isopropylmalate/homocitrate synthase family transferase (EC:2.3.3.13)
2-isopropylmalate synthase Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LSS5_ACIC1
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_21
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(23590..24654)
DNA (1065bp) protein (355aa)
3-isopropylmalate dehydrogenase Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LML1_SYNFM
3-isopropylmalate dehydrogenase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_22
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(24651..26204)
DNA (1554bp) protein (518aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
2-isopropylmalate synthase Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=LEU1_ACIFD
2-isopropylmalate synthase
PLM3_60_coex_sep16_scaffold_3761_23
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(26197..26520)
DNA (324bp) protein (108aa)
Ketol-acid reductoisomerase Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TJ32_9CHLR
ketol-acid reductoisomerase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(26549..27169)
DNA (621bp) protein (207aa)
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase Tax=Saccharopolyspora rectivirgula RepID=I0JV92_9PSEU
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_25
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(27232..27786)
DNA (555bp) protein (185aa)
ilvH; acetolactate synthase 3 regulatory subunit (EC:2.2.1.6)
acetolactate synthase Tax=Dietzia alimentaria RepID=UPI00029A85F3
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_26
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(27783..29531)
DNA (1749bp) protein (583aa)
Acetolactate synthase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SEK2_GEOOG
acetolactate synthase large subunit, biosynthetic type
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_27
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(29528..29851)
DNA (324bp) protein (108aa)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3761_28
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

30154..31077
DNA (924bp) protein (308aa)
putative choline kinase involved in LPS biosynthesis bin=bin8_Chloro species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
putative choline kinase involved in LPS biosynthesis
Tax=CSP1_4_Chloroflexi
PLM3_60_coex_sep16_scaffold_3761_29
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

31079..31663
DNA (585bp) protein (195aa)
glycine cleavage system protein T bin=bin8_Chloro species=Nonomuraea coxensis genus=Nonomuraea taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
glycine cleavage system protein T
Tax=CSP1_4_Chloroflexi
Displaying 29 items

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