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PLM3_60_coex_sep16_scaffold_5221

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_5221_1
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(1..534)
DNA (534bp) protein (178aa)
Elongation factor Tu Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LXU4_HIPMA
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
PLM3_60_coex_sep16_scaffold_5221_2
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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577..963
DNA (387bp) protein (129aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=EFTU_ACIC1
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_5221_3
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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990..1298
DNA (309bp) protein (103aa)
30S ribosomal protein S10 Tax=Nocardioidaceae RepID=RS10_NOCSJ
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
PLM3_60_coex_sep16_scaffold_5221_4
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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1315..1980
DNA (666bp) protein (222aa)
50S ribosomal protein L3 Tax=Streptomyces violaceusniger Tu 4113 RepID=G2PBM2_STRVO
50S ribosomal protein L3
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces violaceusniger Tu 4113.;"
PLM3_60_coex_sep16_scaffold_5221_5
Propionimicrobium lymphophilum, Propionimicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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1980..2642
DNA (663bp) protein (221aa)
UPI0003D79808 related cluster Tax=unknown RepID=UPI0003D79808
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionimicrobium.;" source="Propionimicrobium lymphophilum ACS-093-V-SCH5.;"
50S ribosomal protein L4
PLM3_60_coex_sep16_scaffold_5221_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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2639..2929
DNA (291bp) protein (97aa)
50S ribosomal protein L23 Tax=Propionibacterium RepID=M9VFD7_9ACTO
rplW; 50S ribosomal protein L23
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5221_7
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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2933..3763
DNA (831bp) protein (277aa)
50S ribosomal protein L2 Tax=Nocardiopsis prasina RepID=UPI00034BD755
50S ribosomal protein L2
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5221_8
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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3763..4044
DNA (282bp) protein (94aa)
30S ribosomal protein S19 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A374_THECD
30S ribosomal protein S19
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5221_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


4047..4391
DNA (345bp) protein (115aa)
50S ribosomal protein L22 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R8I5_AMMDK
50S ribosomal protein L22
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5221_10
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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4391..5374
DNA (984bp) protein (328aa)
30S ribosomal protein S3 Tax=Streptomyces acidiscabies RepID=UPI000287CACE
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
PLM3_60_coex_sep16_scaffold_5221_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


5374..5793
DNA (420bp) protein (140aa)
50S ribosomal protein L16 Tax=Patulibacter medicamentivorans RepID=H0E8P7_9ACTN
50S ribosomal protein L16
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5221_12
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


5793..6041
DNA (249bp) protein (83aa)
50S ribosomal protein L29 Tax=Youngiibacter fragilis 232.1 RepID=V7I768_9CLOT
rpmC; 50S ribosomal protein L29
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5221_13
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


6038..6358
DNA (321bp) protein (107aa)
30S ribosomal protein S17 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WTW4_ALIAD
30S ribosomal protein S17
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5221_14
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


6359..6730
DNA (372bp) protein (124aa)
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 bin=bin9_gal15 species=Acidimicrobium ferrooxidans genus=Acidimicrobium taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
50S ribosomal protein L14
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5221_15
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


6733..6996
DNA (264bp) protein (88aa)
50S ribosomal protein L24 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DPD3_DESRL
50S ribosomal protein L24
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Displaying 15 items

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