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PLM3_60_coex_sep16_scaffold_1895

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1895_1
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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1..1506
DNA (1506bp) protein (502aa)
Probable primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
Primosomal protein N' (Replication factor Y) Tax=Frankia alni (strain ACN14a) RepID=Q0RF88_FRAAA
priA; primosome assembly protein PriA
PLM3_60_coex_sep16_scaffold_1895_2
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

1503..2045
DNA (543bp) protein (181aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase Tax=Nocardia brasiliensis ATCC 700358 RepID=K0F369_9NOCA
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_3
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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2110..3045
DNA (936bp) protein (312aa)
Methionyl-tRNA formyltransferase Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I503_DESAP
methionyl-tRNA formyltransferase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_4
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

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3123..4400
DNA (1278bp) protein (426aa)
Ribosomal RNA small subunit methyltransferase B Tax=Corynebacterium RepID=U7KNK1_9CORY
sun protein
Tax=BJP_08E140C01_Clostridiales_46_19
PLM3_60_coex_sep16_scaffold_1895_5
unknown

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comp(4885..5334)
DNA (450bp) protein (150aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1895_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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5709..6782
DNA (1074bp) protein (358aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI000363C72B
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_7
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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7064..7279
DNA (216bp) protein (72aa)
Riboflavin synthase, alpha subunit Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U4V4_OCEP5
riboflavin synthase subunit alpha
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_8
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

7276..8535
DNA (1260bp) protein (420aa)
ribBA; riboflavin biosynthesis protein RibBA (EC:4.1.99.12 3.5.4.25)
Riboflavin biosynthesis protein RibBA Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LFH3_THEPS
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

8607..9005
DNA (399bp) protein (133aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQB4_KYRT2
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_10
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

9009..9359
DNA (351bp) protein (117aa)
Mannose-1-phosphate guanylyltransferase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AZH5_STRRD
mannose-1-phosphate guanylyltransferase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

9441..9644
DNA (204bp) protein (68aa)
Cold shock protein, CspA family Tax=Lactobacillus sakei subsp. sakei RepID=R9GB90_LACSK
csp1; cold shock protein CspA family protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_12
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

9836..10390
DNA (555bp) protein (185aa)
Translation initiation factor IF-3 Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6S8D9_INTC7
translation initiation factor 3 (bIF-3)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_13
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


10398..10589
DNA (192bp) protein (64aa)
50S ribosomal protein L35 Tax=uncultured bacterium RepID=K2E0P3_9BACT
rpmI; 50S ribosomal protein L35
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_14
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


10597..10956
DNA (360bp) protein (120aa)
50S ribosomal protein L20 Tax=Adlercreutzia equolifaciens DSM 19450 RepID=S6CCL9_9ACTN
50S ribosomal protein L20
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_15
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

11040..12479
DNA (1440bp) protein (480aa)
tRNA/rRNA methyltransferase (SpoU) Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AVG5_STRRD
tRNA/rRNA methyltransferase SpoU
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_16
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


12518..13576
DNA (1059bp) protein (353aa)
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWF9_RUBXD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


13573..15948
DNA (2376bp) protein (792aa)
Phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit Tax=Cystobacter fuscus DSM 2262 RepID=S9NW16_9DELT
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_18
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

16003..16923
DNA (921bp) protein (307aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase Tax=Frankia sp. EUN1f RepID=D3DCP4_9ACTO
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_19
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

16941..18662
DNA (1722bp) protein (574aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00035F7416
PHP domain-containing protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_20
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

18617..19243
DNA (627bp) protein (209aa)
Putative 3-methyladenine DNA glycosylase Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KKX4_9FIRM
DNA-3-methyladenine glycosylase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1895_21
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(19221..20264)
DNA (1044bp) protein (348aa)
penicillin-binding protein (EC:2.4.1.129)
Membrane carboxypeptidase (Penicillin-binding protein) Tax=uncultured actinobacterium HF4000_04C13 RepID=E0XVB2_9ACTN
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Displaying 21 items

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