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PLM3_60_coex_sep16_scaffold_3404

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3404_1
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..509
DNA (507bp) protein (169aa)
Putative acyl-coa dehydrogenase protein Tax=Ralstonia solanacearum IPO1609 RepID=B5SFS8_RALSL
Uncharacterized protein {ECO:0000313|EMBL:EAP70795.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum UW551.;"
hydrolase
PLM3_60_coex_sep16_scaffold_3404_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(519..992)
DNA (474bp) protein (158aa)
4-hydroxybenzoyl-CoA thioesterase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-hydroxybenzoyl-coa thioesterase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_3404_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1077..1202)
DNA (126bp) protein (42aa)
Putative uncharacterized iron-regulated membrane protein Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7P9S7_CHIPD
hypothetical protein
Putative uncharacterized iron-regulated membrane protein {ECO:0000313|EMBL:ACU57529.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
PLM3_60_coex_sep16_scaffold_3404_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1267..1662)
DNA (396bp) protein (132aa)
Alpha/beta hydrolase Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3AU73_STRMB
Epoxide hydrolase {ECO:0000313|EMBL:CDX34843.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
alpha/beta hydrolase fold family protein
PLM3_60_coex_sep16_scaffold_3404_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2113..2523)
DNA (411bp) protein (137aa)
MaoC domain protein dehydratase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CP33_DESK7
Putative dehydratase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_60_coex_sep16_scaffold_3404_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2636..3055)
DNA (420bp) protein (140aa)
dehydratase Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEFB0
acyl dehydratase MaoC
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_60_coex_sep16_scaffold_3404_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3204..4142
DNA (939bp) protein (313aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase bin=GWA2_Methylomirabilis_73_35 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_3404_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4158..5120)
DNA (963bp) protein (321aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding bin=GWC2_Methylomirabilis_70_24 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
D-isomer specific 2-hydroxyacid dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3404_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(5121..6341)
DNA (1221bp) protein (407aa)
serine--pyruvate transaminase (EC:2.6.1.51)
Serine--pyruvate transaminase bin=GWA2_Methylomirabilis_73_35 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3404_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(6378..6662)
DNA (285bp) protein (95aa)
Putative membrane protein bin=GWA2_Methylomirabilis_73_35 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Lipid A biosynthesis domain protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3404_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(6720..7076)
DNA (357bp) protein (119aa)
transcriptional regulator y4dJ bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3404_12
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7213..7521)
DNA (309bp) protein (103aa)
ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
putative ferredoxin
Tax=RBG_13_Deltaproteobacteria_65_10_curated
PLM3_60_coex_sep16_scaffold_3404_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(7521..7895)
DNA (375bp) protein (125aa)
Periplasmic thiol:disulfide interchange protein DsbA bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DSBA-like thioredoxin domain-containing protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_3404_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7956..8150)
DNA (195bp) protein (65aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_3404_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8166..8621
DNA (456bp) protein (152aa)
hypothetical protein bin=bin7_NC10_sister species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3404_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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8629..8991
DNA (363bp) protein (121aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_60_coex_sep16_scaffold_3404_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8988..9755)
DNA (768bp) protein (256aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3404_18
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

9867..10478
DNA (612bp) protein (204aa)
Molybdopterin binding protein bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium F25-01 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative sulfite oxidase, molybdopterin binding
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_60_coex_sep16_scaffold_3404_19
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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10532..11131
DNA (600bp) protein (200aa)
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM3_60_coex_sep16_scaffold_3404_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(11118..12254)
DNA (1137bp) protein (379aa)
major facilitator superfamily protein bin=bin7_NC10_sister species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
glpT; GlpT transporter; quinolone resistence protein
Tax=CSP1_6_Rokubacteria
PLM3_60_coex_sep16_scaffold_3404_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12295..13122)
DNA (828bp) protein (276aa)
alpha/beta hydrolase fold protein bin=bin7_NC10_sister species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase fold protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3404_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13154..14068
DNA (915bp) protein (305aa)
Cobalt-zinc-cadmium resistance protein CzcD bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cation transporter
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3404_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14111..15658
DNA (1548bp) protein (516aa)
Altronate dehydratase (EC:4.2.1.7)
D-galactarate dehydratase/altronate hydrolase-like protein bin=GWC2_Methylomirabilis_70_16 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3404_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15639..15980)
DNA (342bp) protein (114aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 24 items

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