ggKbase home page

PLM3_60_coex_sep16_scaffold_3847

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3847_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1..681)
DNA (681bp) protein (227aa)
Membrane lipoprotein lipid attachment site bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3847_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(701..1474)
DNA (774bp) protein (258aa)
Abc transporter permease protein bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3847_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1525..2052)
DNA (528bp) protein (176aa)
Phage integrase protein (DNA breaking and rejoining enzyme) bin=GWC2_Methylomirabilis_70_24 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
phage integrase family protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_60_coex_sep16_scaffold_3847_4
unknown

Not on your lists

2068..2400
DNA (333bp) protein (111aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3847_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2397..3113
DNA (717bp) protein (239aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3847_6
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3137..3580)
DNA (444bp) protein (148aa)
Uncharacterized protein Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HI47_ACHXA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP17906.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
PLM3_60_coex_sep16_scaffold_3847_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3710..4066
DNA (357bp) protein (119aa)
hypothetical protein Tax=Legionella shakespearei RepID=UPI00036BB48A
ATP-dependent DNA ligase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3847_8
unknown

Not on your lists

4021..4248
DNA (228bp) protein (76aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3847_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4832..5821
DNA (990bp) protein (330aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative CgeB family protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3847_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5818..7047
DNA (1230bp) protein (410aa)
thrC-like; threonine synthase (EC:4.2.3.1)
Threonine synthase ThrC bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3847_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7059..7631
DNA (573bp) protein (191aa)
Putative 3-methyladenine DNA glycosylase bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-3-methyladenine glycosylase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3847_12
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

7791..8132
DNA (342bp) protein (114aa)
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_coex_sep16_scaffold_3847_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8120..8290)
DNA (171bp) protein (57aa)
Beta-lactamase domain protein bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rnz; ribonuclease Z
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 13 items

View Taxonomy