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PLM3_60_coex_sep16_scaffold_23433

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_23433_1
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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comp(2..127)
DNA (126bp) protein (42aa)
tuf; elongation factor Tu (EC:3.6.5.3)
tufB; Elongation factor Tu (EF-Tu) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_60_coex_sep16_scaffold_23433_trna_4
unknown

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comp(179..251)
DNA (73bp)
transferRNA Thr
PLM3_60_coex_sep16_scaffold_23433_trna_3
unknown

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comp(326..397)
DNA (72bp)
transferRNA Gly
PLM3_60_coex_sep16_scaffold_23433_trna_2
unknown

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comp(539..621)
DNA (83bp)
transferRNA Tyr
PLM3_60_coex_sep16_scaffold_23433_trna_1
unknown

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comp(681..752)
DNA (72bp)
transferRNA Thr
PLM3_60_coex_sep16_scaffold_23433_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(792..1544)
DNA (753bp) protein (251aa)
rRNA methyltransferase bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_23433_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(1541..2929)
DNA (1389bp) protein (463aa)
Cysteine--tRNA ligase bin=GWC2_Methylomirabilis_70_24 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cysS; cysteinyl-tRNA ligase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_23433_4
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2926..3030)
DNA (105bp) protein (35aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
cysS; cysteine--tRNA ligase CysS (EC:6.1.1.16)
Cysteine--tRNA ligase Tax=Ruminococcus sp. CAG:177 RepID=R6I4L8_9FIRM
PLM3_60_coex_sep16_scaffold_23433_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(3113..3592)
DNA (480bp) protein (160aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_23433_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3589..4251)
DNA (663bp) protein (221aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:2.7.7.60 4.6.1.12)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum ruminis genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_23433_7
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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comp(4244..5230)
DNA (987bp) protein (329aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_60_coex_sep16_scaffold_23433_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(5230..5484)
DNA (255bp) protein (85aa)
DNA repair protein radA bin=GWA2_Methylomirabilis_73_35 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA repair protein RadA
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 12 items

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