ggKbase home page

PLM3_60_coex_sep16_scaffold_2300

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2300_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..1373)
DNA (1371bp) protein (457aa)
Amidase bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_60_coex_sep16_scaffold_2300_2
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1370..1879)
DNA (510bp) protein (170aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00037057EF
histidine kinase
Uncharacterized protein {ECO:0000313|EMBL:BAL09610.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
PLM3_60_coex_sep16_scaffold_2300_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1879..2781)
DNA (903bp) protein (301aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00037C2A85
ABC transporter permease protein {ECO:0000313|EMBL:KFC63460.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter permease
PLM3_60_coex_sep16_scaffold_2300_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2785..3654)
DNA (870bp) protein (290aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00037326F4
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:KFC63461.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hydrophobic amino acid ABC transporter permease
PLM3_60_coex_sep16_scaffold_2300_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3656..4870)
DNA (1215bp) protein (405aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00036DFB2D
Extracellular ligand-binding receptor {ECO:0000313|EMBL:KFC63462.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter substrate-binding protein
PLM3_60_coex_sep16_scaffold_2300_6
bacterium YEK0313, Bacteria

Not on your lists

comp(4934..5641)
DNA (708bp) protein (236aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI000376579D
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ11561.1}; species="Bacteria.;" source="bacterium YEK0313.;"
branched-chain amino acid ABC transporter ATPase
PLM3_60_coex_sep16_scaffold_2300_7
bacterium YEK0313, Bacteria

Not on your lists

comp(5629..6399)
DNA (771bp) protein (257aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI0003657F9C
Lipopolysaccharide export system ATP-binding protein LptB {ECO:0000313|EMBL:CEJ11562.1}; species="Bacteria.;" source="bacterium YEK0313.;"
branched-chain amino acid ABC transporter ATPase
PLM3_60_coex_sep16_scaffold_2300_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6410..7198)
DNA (789bp) protein (263aa)
Enoyl-CoA hydratase/isomerase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4Q7_SPHTD
Enoyl-CoA hydratase/isomerase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_2300_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7247..7552
DNA (306bp) protein (102aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_2300_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7549..8172
DNA (624bp) protein (208aa)
Pyrrolidone-carboxylate peptidase bin=GWA2_Methylomirabilis_73_35 species=Pyrococcus furiosus genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyrrolidone-carboxylate peptidase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_2300_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8169..9425
DNA (1257bp) protein (419aa)
Major facilitator superfamily MFS_1 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator superfamily transporter
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_2300_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9422..10132
DNA (711bp) protein (237aa)
Haloacid dehalogenase superfamily enzyme, subfamily IA bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phosphoglycolate phosphatase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_2300_13
unknown

Not on your lists

10129..10251
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying 13 items

View Taxonomy