ggKbase home page

PLM3_60_coex_sep16_scaffold_2373

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2373_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..110)
DNA (108bp) protein (36aa)
adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
adenylosuccinate lyase (EC:4.3.2.2)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_2373_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(153..1415)
DNA (1263bp) protein (421aa)
ymxG; hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ymxG; hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_2373_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1408..1776)
DNA (369bp) protein (123aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_60_coex_sep16_scaffold_2373_4
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

2033..2158
DNA (126bp) protein (42aa)
Tax=RBG_16_NC10_65_8_curated
PLM3_60_coex_sep16_scaffold_2373_5
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

2294..2944
DNA (651bp) protein (217aa)
psrP; cell wall surface anchored protein
id=4289048 bin=GWC2_Elusimicrobia_64_44 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_60_coex_sep16_scaffold_2373_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(3557..3826)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 bin=GWA2_Methylomirabilis_73_35 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S15
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_2373_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3952..4869)
DNA (918bp) protein (306aa)
Riboflavin biosynthesis protein RibF bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
riboflavin biosynthesis protein RibF
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_2373_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4832..5749)
DNA (918bp) protein (306aa)
tRNA pseudouridine synthase B bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA pseudouridine synthase b
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_2373_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5746..6648)
DNA (903bp) protein (301aa)
Exopolyphosphatase-like enzyme bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoesterase RecJ domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_60_coex_sep16_scaffold_2373_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6782..7132)
DNA (351bp) protein (117aa)
Ribosome-binding factor A bin=GWA2_Methylomirabilis_73_35 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rbfA; ribosome-binding factor A
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_2373_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7132..7422)
DNA (291bp) protein (97aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_60_coex_sep16_scaffold_2373_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7444..9978)
DNA (2535bp) protein (845aa)
Translation initiation factor IF-2 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infB; translation initiation factor IF-2
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_2373_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9993..10286)
DNA (294bp) protein (98aa)
Putative nucleic-acid-binding protein implicated in transcription termination bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_2373_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10283..11617)
DNA (1335bp) protein (445aa)
NusA antitermination factor bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusA antitermination factor
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_2373_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11614..12090)
DNA (477bp) protein (159aa)
Ribosome maturation factor RimP bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_2373_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12199..12438)
DNA (240bp) protein (80aa)
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 16 items

View Taxonomy